miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 3' -55.6 NC_001798.1 + 154419 0.71 0.695532
Target:  5'- cGGCG-GGCGGGCGGCAGgGCaGCCCc -3'
miRNA:   3'- -UCGCgCUGCUUGUUGUCgUGgUGGGu -5'
5464 3' -55.6 NC_001798.1 + 154043 0.66 0.908771
Target:  5'- gAGCGCGcCGGGgcGCGGCACgGCUgGa -3'
miRNA:   3'- -UCGCGCuGCUUguUGUCGUGgUGGgU- -5'
5464 3' -55.6 NC_001798.1 + 153827 0.71 0.68537
Target:  5'- aGGCGCGGCGuGCGGggccucCGGCGCCuuCCCc -3'
miRNA:   3'- -UCGCGCUGCuUGUU------GUCGUGGu-GGGu -5'
5464 3' -55.6 NC_001798.1 + 153487 0.68 0.836303
Target:  5'- cGCGCGGCGAGaAGCA-CACCugCgGg -3'
miRNA:   3'- uCGCGCUGCUUgUUGUcGUGGugGgU- -5'
5464 3' -55.6 NC_001798.1 + 153239 0.7 0.725656
Target:  5'- cGCgGCGGCGGAgGACccgcGCGCCGCCg- -3'
miRNA:   3'- uCG-CGCUGCUUgUUGu---CGUGGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 153078 0.68 0.819351
Target:  5'- gGGCggaGCGGCGG--GGCGGCGCCggGCCCu -3'
miRNA:   3'- -UCG---CGCUGCUugUUGUCGUGG--UGGGu -5'
5464 3' -55.6 NC_001798.1 + 153037 0.78 0.314348
Target:  5'- cGCGCGGCGGcgcGCGGuuggcCGGCGCCGCCCc -3'
miRNA:   3'- uCGCGCUGCU---UGUU-----GUCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 152942 0.7 0.725656
Target:  5'- uGCGCGG-GGAUGGCGGCcgggACCGCCUAu -3'
miRNA:   3'- uCGCGCUgCUUGUUGUCG----UGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 152043 0.66 0.908771
Target:  5'- gAGgGuCGGgGGGCGGC-GCACgGCCCAc -3'
miRNA:   3'- -UCgC-GCUgCUUGUUGuCGUGgUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 151578 0.68 0.827917
Target:  5'- cGCGuCGGCGGGCGugGG-GCUGCCCu -3'
miRNA:   3'- uCGC-GCUGCUUGUugUCgUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 150749 0.75 0.473952
Target:  5'- cGGCaCGACGGccGCGACGGCaggGCCGCCCc -3'
miRNA:   3'- -UCGcGCUGCU--UGUUGUCG---UGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 149795 0.69 0.792652
Target:  5'- cGGaCGCGACGcuccCAcCAGCcCCGCCCGc -3'
miRNA:   3'- -UC-GCGCUGCuu--GUuGUCGuGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 149478 0.7 0.745346
Target:  5'- gGGcCGCGGCccGCAGCAGguCCGCCa- -3'
miRNA:   3'- -UC-GCGCUGcuUGUUGUCguGGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 147717 0.67 0.867897
Target:  5'- aAGgGCaGGCaGGuCAGCcGCACCGCCCGc -3'
miRNA:   3'- -UCgCG-CUG-CUuGUUGuCGUGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 146832 0.67 0.889364
Target:  5'- gGGCGCGGC-AGCAACgaacgcaggGGCccGCCGCCg- -3'
miRNA:   3'- -UCGCGCUGcUUGUUG---------UCG--UGGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 146584 0.72 0.623774
Target:  5'- gGGCcaGCaGACGGGCcGCGGCGCCagcgGCCCAc -3'
miRNA:   3'- -UCG--CG-CUGCUUGuUGUCGUGG----UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 145924 0.7 0.714682
Target:  5'- -uCGCGGCGAGacGCAGCcgggcccccccccACCACCCGc -3'
miRNA:   3'- ucGCGCUGCUUguUGUCG-------------UGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 144413 0.69 0.774106
Target:  5'- uAGgGCGACGAcGCugGACAGC-CgACCCGg -3'
miRNA:   3'- -UCgCGCUGCU-UG--UUGUCGuGgUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 143897 0.66 0.898683
Target:  5'- cGCGCuuGACGGucagggucguguucaACAACAGCACgccgucgcgaGCCCAc -3'
miRNA:   3'- uCGCG--CUGCU---------------UGUUGUCGUGg---------UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 143817 0.68 0.819351
Target:  5'- cGgGCGGCGcGCGGcCAGCcguuggACCACCCc -3'
miRNA:   3'- uCgCGCUGCuUGUU-GUCG------UGGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.