miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5466 3' -61 NC_001798.1 + 19011 0.74 0.308792
Target:  5'- uUCGGCUccUGcaucaagagcgCCcCGGCCCCCACCGGCu -3'
miRNA:   3'- -GGCUGA--ACa----------GGcGCCGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 82012 0.74 0.315627
Target:  5'- gCGACcgccgCCGCGGCCgCCGCCaGACa -3'
miRNA:   3'- gGCUGaaca-GGCGCCGGgGGUGG-CUG- -5'
5466 3' -61 NC_001798.1 + 79676 0.74 0.318392
Target:  5'- gCUGAUgcGUCCcgaggcggccugcguGCGGCCCCCGcuuCCGACg -3'
miRNA:   3'- -GGCUGaaCAGG---------------CGCCGGGGGU---GGCUG- -5'
5466 3' -61 NC_001798.1 + 107198 0.73 0.336813
Target:  5'- gCCGugUUggcGUUCGUGGCCCUCAugcccCCGACc -3'
miRNA:   3'- -GGCugAA---CAGGCGCCGGGGGU-----GGCUG- -5'
5466 3' -61 NC_001798.1 + 32056 0.73 0.336813
Target:  5'- cCCGGC--GUCCGCGggcgccgcGCCCCCGUCGGCg -3'
miRNA:   3'- -GGCUGaaCAGGCGC--------CGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 115522 0.73 0.344102
Target:  5'- -gGGCguacgUCGCGGCCCCgGCCGGCc -3'
miRNA:   3'- ggCUGaaca-GGCGCCGGGGgUGGCUG- -5'
5466 3' -61 NC_001798.1 + 70254 0.72 0.366642
Target:  5'- gCCGGCguuucUGUCCGCGGCCaaacugcaCGCCGcCa -3'
miRNA:   3'- -GGCUGa----ACAGGCGCCGGgg------GUGGCuG- -5'
5466 3' -61 NC_001798.1 + 17930 0.72 0.374378
Target:  5'- uCCGGggUGaaccCCGUGGCCCCCACCu-- -3'
miRNA:   3'- -GGCUgaACa---GGCGCCGGGGGUGGcug -5'
5466 3' -61 NC_001798.1 + 114092 0.72 0.382224
Target:  5'- aCCGGuacg-CCGCGGCCauccugCCCACCGGCu -3'
miRNA:   3'- -GGCUgaacaGGCGCCGG------GGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 75558 0.72 0.382224
Target:  5'- cCUGGCgga--CGUGGCCgCCCACCGGCc -3'
miRNA:   3'- -GGCUGaacagGCGCCGG-GGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 3166 0.72 0.395811
Target:  5'- gCCGGCgccGUCgucgucgucgucguCGuCGGCCCCgGCCGGCg -3'
miRNA:   3'- -GGCUGaa-CAG--------------GC-GCCGGGGgUGGCUG- -5'
5466 3' -61 NC_001798.1 + 94438 0.71 0.414681
Target:  5'- aCGGCcgG-CCaGaCGGCCCCCGCCGAg -3'
miRNA:   3'- gGCUGaaCaGG-C-GCCGGGGGUGGCUg -5'
5466 3' -61 NC_001798.1 + 128257 0.71 0.423056
Target:  5'- gCCGGCaUGguggaCCGCGGgCUCgGCCGGCa -3'
miRNA:   3'- -GGCUGaACa----GGCGCCgGGGgUGGCUG- -5'
5466 3' -61 NC_001798.1 + 70109 0.71 0.431532
Target:  5'- gCGcGCUccagGUCC-CGGCgCCCGCCGGCa -3'
miRNA:   3'- gGC-UGAa---CAGGcGCCGgGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 128841 0.71 0.431532
Target:  5'- cCCGGCgcccCCGCGGCCUCCGCguaCGAg -3'
miRNA:   3'- -GGCUGaacaGGCGCCGGGGGUG---GCUg -5'
5466 3' -61 NC_001798.1 + 31572 0.71 0.440106
Target:  5'- -gGGCgcg-CCGCGcGCCCCCGCgCGGCc -3'
miRNA:   3'- ggCUGaacaGGCGC-CGGGGGUG-GCUG- -5'
5466 3' -61 NC_001798.1 + 32565 0.71 0.440106
Target:  5'- aCCuGCUgcgGgCCGCGGCCCCCGCgUGGa -3'
miRNA:   3'- -GGcUGAa--CaGGCGCCGGGGGUG-GCUg -5'
5466 3' -61 NC_001798.1 + 154548 0.71 0.448777
Target:  5'- gCGGCUUuuuucCCGCGcccGCCCCCGCgCGGCa -3'
miRNA:   3'- gGCUGAAca---GGCGC---CGGGGGUG-GCUG- -5'
5466 3' -61 NC_001798.1 + 48212 0.71 0.448777
Target:  5'- -gGACaUGU-CGCGGCCgCaCACCGACg -3'
miRNA:   3'- ggCUGaACAgGCGCCGGgG-GUGGCUG- -5'
5466 3' -61 NC_001798.1 + 28855 0.71 0.448777
Target:  5'- aCCGGCgaGg--GCGGCCUCgGCCGGCg -3'
miRNA:   3'- -GGCUGaaCaggCGCCGGGGgUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.