miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5470 3' -49.3 NC_001798.1 + 154417 0.66 0.998048
Target:  5'- gGCGgcGGGCGGGcggcagggcagccccGCG-CGCCCCCu- -3'
miRNA:   3'- aUGCauUUCGUUU---------------UGCaGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 151847 0.73 0.896951
Target:  5'- gGCGUGAGGCGGGAcccccgcgcCGUguCCCCCGu -3'
miRNA:   3'- aUGCAUUUCGUUUU---------GCAguGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 151496 0.67 0.995842
Target:  5'- -cCGUGcacacGGCAcacACGUCGCCCCCc- -3'
miRNA:   3'- auGCAUu----UCGUuu-UGCAGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 150941 0.67 0.992034
Target:  5'- gACGUAguccacugcagaggGAGacaGAGACGggaGCCCCCGGu -3'
miRNA:   3'- aUGCAU--------------UUCg--UUUUGCag-UGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 150761 0.69 0.976325
Target:  5'- cGCGac-GGCAGGGC--CGCCCCCAGa -3'
miRNA:   3'- aUGCauuUCGUUUUGcaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 149651 0.71 0.952545
Target:  5'- cGCGUGAGGCcGGGCGccgggUCGCgggCCCCGGg -3'
miRNA:   3'- aUGCAUUUCGuUUUGC-----AGUG---GGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 146423 0.67 0.994316
Target:  5'- gGCGagccGGGCAGAguGCGgaGCCCCCGGa -3'
miRNA:   3'- aUGCau--UUCGUUU--UGCagUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 143293 0.67 0.992368
Target:  5'- gACGUAGGGgc---CGUcCGCCCCCGGc -3'
miRNA:   3'- aUGCAUUUCguuuuGCA-GUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 139371 0.66 0.997355
Target:  5'- gGCGgggAGGGCucgcGGGACGUCcgggcaccagguccGCCCCCAc -3'
miRNA:   3'- aUGCa--UUUCG----UUUUGCAG--------------UGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 138133 0.7 0.970692
Target:  5'- aACGccuGGCGAAgcugcuGCGgucgCGCCCCCGGg -3'
miRNA:   3'- aUGCauuUCGUUU------UGCa---GUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 136873 0.66 0.9979
Target:  5'- aGCG-AGGGCGugGCGUgGCUCCgGGg -3'
miRNA:   3'- aUGCaUUUCGUuuUGCAgUGGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 135875 0.67 0.9934
Target:  5'- gACGcGGAGUAcugGAGCGUUcugaccCCCCCAGg -3'
miRNA:   3'- aUGCaUUUCGU---UUUGCAGu-----GGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 133968 0.66 0.997016
Target:  5'- uUGgGUGGAGgAGAGCGUCAgCgCCAu -3'
miRNA:   3'- -AUgCAUUUCgUUUUGCAGUgGgGGUc -5'
5470 3' -49.3 NC_001798.1 + 132155 0.72 0.922364
Target:  5'- -cCGgcGGGCGGGGCGcCcCCCCCGGa -3'
miRNA:   3'- auGCauUUCGUUUUGCaGuGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 131141 0.68 0.989921
Target:  5'- cUGCGUGuccaaccgGAGgGGGACGgcuaCACCCCCGc -3'
miRNA:   3'- -AUGCAU--------UUCgUUUUGCa---GUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 125767 0.74 0.834183
Target:  5'- gACGUuuGGcCGAGACG-CACCUCCGGg -3'
miRNA:   3'- aUGCAuuUC-GUUUUGCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 124150 0.67 0.995842
Target:  5'- gGCG-GAGGCcugucccuGCGUCGCCCCguGc -3'
miRNA:   3'- aUGCaUUUCGuuu-----UGCAGUGGGGguC- -5'
5470 3' -49.3 NC_001798.1 + 122362 0.72 0.910183
Target:  5'- gGCGUGGGGCGGgcGACGcgccCGCCCCCc- -3'
miRNA:   3'- aUGCAUUUCGUU--UUGCa---GUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 121938 0.75 0.788083
Target:  5'- aGCGggccguGCAGGACGUCACCCgCCGc -3'
miRNA:   3'- aUGCauuu--CGUUUUGCAGUGGG-GGUc -5'
5470 3' -49.3 NC_001798.1 + 121051 0.66 0.9979
Target:  5'- aGCGUAuAAGCGc-ACGUgCGCCCgCGGg -3'
miRNA:   3'- aUGCAU-UUCGUuuUGCA-GUGGGgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.