miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5472 5' -65 NC_001798.1 + 86903 0.76 0.137282
Target:  5'- cCCCGGCGuGGaGCGccGGGCCUCCCGCa- -3'
miRNA:   3'- -GGGCCGC-CC-CGUa-CCUGGGGGGUGcg -5'
5472 5' -65 NC_001798.1 + 34100 0.76 0.137282
Target:  5'- aCCGGCGcgugggggcgguGGGCGUacGGGCCCgaCCCGCGCc -3'
miRNA:   3'- gGGCCGC------------CCCGUA--CCUGGG--GGGUGCG- -5'
5472 5' -65 NC_001798.1 + 45411 0.76 0.137282
Target:  5'- aCCCGcaccGCGGGGCuUGGAgcgaccgaggccCCCCCCGgGCc -3'
miRNA:   3'- -GGGC----CGCCCCGuACCU------------GGGGGGUgCG- -5'
5472 5' -65 NC_001798.1 + 69515 0.75 0.154682
Target:  5'- gCCgGaGCGGGGCGUGG-CCCgcgagCUCGCGCg -3'
miRNA:   3'- -GGgC-CGCCCCGUACCuGGG-----GGGUGCG- -5'
5472 5' -65 NC_001798.1 + 152515 0.75 0.15802
Target:  5'- cCCCGGCgGGGGCGgagGGAgggaaucCCCCCCucuCGg -3'
miRNA:   3'- -GGGCCG-CCCCGUa--CCU-------GGGGGGu--GCg -5'
5472 5' -65 NC_001798.1 + 2980 0.75 0.166061
Target:  5'- -gCGGCGGGGCGgccggcccgcGGGCCCCggGCGCg -3'
miRNA:   3'- ggGCCGCCCCGUa---------CCUGGGGggUGCG- -5'
5472 5' -65 NC_001798.1 + 151840 0.75 0.170017
Target:  5'- --gGcGCGGGGCGUGaGGCgggaCCCCCGCGCc -3'
miRNA:   3'- gggC-CGCCCCGUAC-CUG----GGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 35433 0.74 0.174058
Target:  5'- -gCGGCGGgaGGCGUGGGCCgCUgGCGCc -3'
miRNA:   3'- ggGCCGCC--CCGUACCUGGgGGgUGCG- -5'
5472 5' -65 NC_001798.1 + 78969 0.74 0.178184
Target:  5'- gUCCGGgGGGGCGccUGGAagUCCCCCgagggguuccGCGCc -3'
miRNA:   3'- -GGGCCgCCCCGU--ACCU--GGGGGG----------UGCG- -5'
5472 5' -65 NC_001798.1 + 132154 0.74 0.178184
Target:  5'- gCCGGC-GGGCggGGcGCCCCCCccggACGCc -3'
miRNA:   3'- gGGCCGcCCCGuaCC-UGGGGGG----UGCG- -5'
5472 5' -65 NC_001798.1 + 31380 0.74 0.182397
Target:  5'- gCCgCGGCGgcggaGGGCA-GGACgCCCCC-CGCg -3'
miRNA:   3'- -GG-GCCGC-----CCCGUaCCUG-GGGGGuGCG- -5'
5472 5' -65 NC_001798.1 + 102385 0.74 0.182397
Target:  5'- gCCUGGCGGucggcGGCgAUGG-CCCCCaccaGCGCg -3'
miRNA:   3'- -GGGCCGCC-----CCG-UACCuGGGGGg---UGCG- -5'
5472 5' -65 NC_001798.1 + 2635 0.74 0.188442
Target:  5'- cCCUGGcCGGGGCggGGcucuugcgcuugcgcGCCUCCCGCGg -3'
miRNA:   3'- -GGGCC-GCCCCGuaCC---------------UGGGGGGUGCg -5'
5472 5' -65 NC_001798.1 + 70121 0.74 0.191087
Target:  5'- uCCCGGCGcccgccGGCAU-GACCCCCC-CGUc -3'
miRNA:   3'- -GGGCCGCc-----CCGUAcCUGGGGGGuGCG- -5'
5472 5' -65 NC_001798.1 + 20014 0.74 0.191087
Target:  5'- gCCGGcCGGGGa--GGGCCCCCCcucCGUg -3'
miRNA:   3'- gGGCC-GCCCCguaCCUGGGGGGu--GCG- -5'
5472 5' -65 NC_001798.1 + 153085 0.74 0.191087
Target:  5'- -gCGGCGGGGCGgcgccGGGCCCUCgcggauauaUACGCg -3'
miRNA:   3'- ggGCCGCCCCGUa----CCUGGGGG---------GUGCG- -5'
5472 5' -65 NC_001798.1 + 51287 0.74 0.200139
Target:  5'- gCCCcGCGGGGaggcuaccUGGGCCCgauggaCCCACGCg -3'
miRNA:   3'- -GGGcCGCCCCgu------ACCUGGG------GGGUGCG- -5'
5472 5' -65 NC_001798.1 + 145640 0.73 0.204803
Target:  5'- gCCCGGCaGGG---GGGCCCCggcgCCGCGCa -3'
miRNA:   3'- -GGGCCGcCCCguaCCUGGGG----GGUGCG- -5'
5472 5' -65 NC_001798.1 + 107157 0.73 0.206695
Target:  5'- aCCCGGCcgcgcgguaccucauGGGaaGCAU-GACCCCCCAgGCc -3'
miRNA:   3'- -GGGCCG---------------CCC--CGUAcCUGGGGGGUgCG- -5'
5472 5' -65 NC_001798.1 + 64099 0.73 0.209561
Target:  5'- aCCGGaauCGGGGCcgccccGGCCCCCgACGCg -3'
miRNA:   3'- gGGCC---GCCCCGuac---CUGGGGGgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.