miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5472 5' -65 NC_001798.1 + 154507 0.77 0.10989
Target:  5'- cCCCGcgcgccGCGGGGCugccuucccgcGGGCgCCCCCGCGCg -3'
miRNA:   3'- -GGGC------CGCCCCGua---------CCUG-GGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 154421 0.73 0.219364
Target:  5'- gCgGGCGGgcGGCA-GGGCagCCCCGCGCg -3'
miRNA:   3'- gGgCCGCC--CCGUaCCUGg-GGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 154306 0.67 0.510686
Target:  5'- gCCCucuuaaggGGCGGcGGCAggacggGGACuCCCgCCcCGCc -3'
miRNA:   3'- -GGG--------CCGCC-CCGUa-----CCUG-GGG-GGuGCG- -5'
5472 5' -65 NC_001798.1 + 154122 0.67 0.501678
Target:  5'- cCCCGGCGGcGG---GGACCCCggCgGCGg -3'
miRNA:   3'- -GGGCCGCC-CCguaCCUGGGG--GgUGCg -5'
5472 5' -65 NC_001798.1 + 153817 0.7 0.330051
Target:  5'- --aGGCGGcGGCAggcgcggcgugcgGGGCCUCCgGCGCc -3'
miRNA:   3'- gggCCGCC-CCGUa------------CCUGGGGGgUGCG- -5'
5472 5' -65 NC_001798.1 + 153756 0.71 0.292889
Target:  5'- gCCaGGUGGGGCGgaaggGGGCgCUgcggCCCGCGCu -3'
miRNA:   3'- gGG-CCGCCCCGUa----CCUG-GG----GGGUGCG- -5'
5472 5' -65 NC_001798.1 + 153679 0.69 0.384304
Target:  5'- gCgGGCGGGGaCGcggGGGCCgCCgCCgGCGCa -3'
miRNA:   3'- gGgCCGCCCC-GUa--CCUGG-GG-GG-UGCG- -5'
5472 5' -65 NC_001798.1 + 153085 0.74 0.191087
Target:  5'- -gCGGCGGGGCGgcgccGGGCCCUCgcggauauaUACGCg -3'
miRNA:   3'- ggGCCGCCCCGUa----CCUGGGGG---------GUGCG- -5'
5472 5' -65 NC_001798.1 + 153000 0.68 0.42416
Target:  5'- gCCGGCgcGGGGCGgucgccgGGGCggaguCCgggCCCGCGCg -3'
miRNA:   3'- gGGCCG--CCCCGUa------CCUG-----GG---GGGUGCG- -5'
5472 5' -65 NC_001798.1 + 152515 0.75 0.15802
Target:  5'- cCCCGGCgGGGGCGgagGGAgggaaucCCCCCCucuCGg -3'
miRNA:   3'- -GGGCCG-CCCCGUa--CCU-------GGGGGGu--GCg -5'
5472 5' -65 NC_001798.1 + 151840 0.75 0.170017
Target:  5'- --gGcGCGGGGCGUGaGGCgggaCCCCCGCGCc -3'
miRNA:   3'- gggC-CGCCCCGUAC-CUG----GGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 151581 0.73 0.214414
Target:  5'- gUCGGC-GGGCGUgGGGCUgCCCugGCg -3'
miRNA:   3'- gGGCCGcCCCGUA-CCUGGgGGGugCG- -5'
5472 5' -65 NC_001798.1 + 150634 0.67 0.466386
Target:  5'- gCCGcGCGGGGCugucucgcgGGgggcguccuGCCCUCCGcCGCc -3'
miRNA:   3'- gGGC-CGCCCCGua-------CC---------UGGGGGGU-GCG- -5'
5472 5' -65 NC_001798.1 + 150424 0.68 0.432424
Target:  5'- -gCGGCGGcGGCGcggggcGGACUCCggaCGCGCg -3'
miRNA:   3'- ggGCCGCC-CCGUa-----CCUGGGGg--GUGCG- -5'
5472 5' -65 NC_001798.1 + 150373 0.7 0.332137
Target:  5'- -aCGGCGGgcGGCGcGGGCCCggccgcgUCCGCGCu -3'
miRNA:   3'- ggGCCGCC--CCGUaCCUGGG-------GGGUGCG- -5'
5472 5' -65 NC_001798.1 + 150225 0.66 0.528897
Target:  5'- gCC-GCGGGGgaccCcgGGuccuCCCUCCGCGCc -3'
miRNA:   3'- gGGcCGCCCC----GuaCCu---GGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 150155 0.68 0.457764
Target:  5'- aCCCGcGCcucuuccgGGGGCG-GGccgccGCCCCCUcCGCg -3'
miRNA:   3'- -GGGC-CG--------CCCCGUaCC-----UGGGGGGuGCG- -5'
5472 5' -65 NC_001798.1 + 150049 0.69 0.361612
Target:  5'- gCCCGGCGcGGCGcc-GCCCUCUugGCc -3'
miRNA:   3'- -GGGCCGCcCCGUaccUGGGGGGugCG- -5'
5472 5' -65 NC_001798.1 + 149674 0.66 0.565986
Target:  5'- gCgGGCcccGGGCucgGGGCCgCCCuCGCGUg -3'
miRNA:   3'- gGgCCGc--CCCGua-CCUGG-GGG-GUGCG- -5'
5472 5' -65 NC_001798.1 + 148083 0.66 0.53717
Target:  5'- aCgGGCcgGGGGCcgGGGCCgCUagggaaagguaggCACGCg -3'
miRNA:   3'- gGgCCG--CCCCGuaCCUGGgGG-------------GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.