miRNA display CGI


Results 1 - 20 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5473 3' -62.9 NC_001798.1 + 154475 0.7 0.381399
Target:  5'- gCCGGCCGcUCCCCcgcgGGCGCC----GCCc -3'
miRNA:   3'- gGGCCGGU-AGGGG----CCGCGGuacuCGG- -5'
5473 3' -62.9 NC_001798.1 + 154270 0.66 0.60427
Target:  5'- uCCCGGCUggCgugcgcagCCCGG-GCCGUGuugcgGGCCc -3'
miRNA:   3'- -GGGCCGGuaG--------GGGCCgCGGUAC-----UCGG- -5'
5473 3' -62.9 NC_001798.1 + 154159 0.67 0.546918
Target:  5'- -gCGGCUGggCUCGGCguagGCCcgGAGCCg -3'
miRNA:   3'- ggGCCGGUagGGGCCG----CGGuaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 153370 0.67 0.585016
Target:  5'- cCUCGGCCGccgCCaCgCGGCGCCG-GAaCCg -3'
miRNA:   3'- -GGGCCGGUa--GG-G-GCCGCGGUaCUcGG- -5'
5473 3' -62.9 NC_001798.1 + 152640 0.68 0.518867
Target:  5'- cCCCGGCgccCCgCCGGCGCgGcccUGAGUg -3'
miRNA:   3'- -GGGCCGguaGG-GGCCGCGgU---ACUCGg -5'
5473 3' -62.9 NC_001798.1 + 152555 0.66 0.633273
Target:  5'- -gCGGCCccGUCCCCGGgGaCCAaccGGGUg -3'
miRNA:   3'- ggGCCGG--UAGGGGCCgC-GGUa--CUCGg -5'
5473 3' -62.9 NC_001798.1 + 152261 0.68 0.491403
Target:  5'- gCCCGGgagcUCGUgCCgGGCcgggguuCCAUGAGCCg -3'
miRNA:   3'- -GGGCC----GGUAgGGgCCGc------GGUACUCGG- -5'
5473 3' -62.9 NC_001798.1 + 152216 0.67 0.585016
Target:  5'- aCCGuGCCGggggucugCCgCGGCgGCCGcucgGGGCCg -3'
miRNA:   3'- gGGC-CGGUa-------GGgGCCG-CGGUa---CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 151594 0.67 0.546918
Target:  5'- --gGGCUG-CCCUGGCGCuCGgccggGGGCCg -3'
miRNA:   3'- gggCCGGUaGGGGCCGCG-GUa----CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 150893 0.68 0.537509
Target:  5'- cCCCGcaccGCCG-CCCCcGCGCCG-GGGCg -3'
miRNA:   3'- -GGGC----CGGUaGGGGcCGCGGUaCUCGg -5'
5473 3' -62.9 NC_001798.1 + 150292 0.67 0.583097
Target:  5'- gCCCGGCCcagacucugugCUUgGGUGUCGgucUGAGCCu -3'
miRNA:   3'- -GGGCCGGua---------GGGgCCGCGGU---ACUCGG- -5'
5473 3' -62.9 NC_001798.1 + 150255 0.66 0.652615
Target:  5'- gCCCGGCCcUCCCgacccGCGCgCGUcGGUCg -3'
miRNA:   3'- -GGGCCGGuAGGGgc---CGCG-GUAcUCGG- -5'
5473 3' -62.9 NC_001798.1 + 149727 0.69 0.44549
Target:  5'- cCUCGGCC--CCCgCGGCGCagcagcgcggGGGCCg -3'
miRNA:   3'- -GGGCCGGuaGGG-GCCGCGgua-------CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 149666 0.72 0.302063
Target:  5'- gCCgGGUCGcgggCCCCGG-GCUcgGGGCCg -3'
miRNA:   3'- -GGgCCGGUa---GGGGCCgCGGuaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 149581 0.68 0.537509
Target:  5'- cCCCGuGaCCGUCUUguucacguaaGGCGCCA-GGGCCa -3'
miRNA:   3'- -GGGC-C-GGUAGGGg---------CCGCGGUaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 148905 0.73 0.276541
Target:  5'- cCCCGGCC--CCCCuGCGCgGggGAGCUg -3'
miRNA:   3'- -GGGCCGGuaGGGGcCGCGgUa-CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 147979 0.7 0.381399
Target:  5'- cCCCaaaGGCgCGUgCCCGGCcacaGCCGUGGGUg -3'
miRNA:   3'- -GGG---CCG-GUAgGGGCCG----CGGUACUCGg -5'
5473 3' -62.9 NC_001798.1 + 147224 0.77 0.158177
Target:  5'- cCCCGGCgGagcgcgggggCCCCGGgGCCccGGGCCg -3'
miRNA:   3'- -GGGCCGgUa---------GGGGCCgCGGuaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 147150 0.75 0.205435
Target:  5'- uCCCGGCCGggggUCCCGGguagcCGCCcgGcGCCg -3'
miRNA:   3'- -GGGCCGGUa---GGGGCC-----GCGGuaCuCGG- -5'
5473 3' -62.9 NC_001798.1 + 147053 0.66 0.60427
Target:  5'- cCCCGGCCGgaggggCCCCcGCaCCucgGcGGCCg -3'
miRNA:   3'- -GGGCCGGUa-----GGGGcCGcGGua-C-UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.