miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5475 3' -55.8 NC_001798.1 + 105957 0.73 0.569431
Target:  5'- uUUCUgaaGCAcAC-CCCCACCCU-CCGCa -3'
miRNA:   3'- gAAGG---CGUaUGuGGGGUGGGAuGGCG- -5'
5475 3' -55.8 NC_001798.1 + 126548 0.73 0.569431
Target:  5'- --cCCGUAUucgccgucaACCCCGCCCU-CCGCu -3'
miRNA:   3'- gaaGGCGUAug-------UGGGGUGGGAuGGCG- -5'
5475 3' -55.8 NC_001798.1 + 38498 0.73 0.569431
Target:  5'- --cCCGgAgucucCGCCCCACCC-GCCGCg -3'
miRNA:   3'- gaaGGCgUau---GUGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 31471 0.73 0.569431
Target:  5'- -cUCCGCGc-CGCCCCgcggGCCCcggGCCGCu -3'
miRNA:   3'- gaAGGCGUauGUGGGG----UGGGa--UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 75710 0.73 0.579508
Target:  5'- -aUCUGCAgcUGCGCgCCGCCCcGCCGg -3'
miRNA:   3'- gaAGGCGU--AUGUGgGGUGGGaUGGCg -5'
5475 3' -55.8 NC_001798.1 + 122788 0.73 0.589622
Target:  5'- --aCCGCGUACGCCCUgGCCgUGCUGg -3'
miRNA:   3'- gaaGGCGUAUGUGGGG-UGGgAUGGCg -5'
5475 3' -55.8 NC_001798.1 + 19367 0.73 0.589622
Target:  5'- --cCCGCAU-CAUCCCGCCCgcauCCGg -3'
miRNA:   3'- gaaGGCGUAuGUGGGGUGGGau--GGCg -5'
5475 3' -55.8 NC_001798.1 + 146502 0.72 0.599767
Target:  5'- --gCCgGCA-ACGCCCCGCgCCgGCCGCg -3'
miRNA:   3'- gaaGG-CGUaUGUGGGGUG-GGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 81914 0.72 0.599767
Target:  5'- cCUUCCGCccg-GCCCCGCCUcgGCuCGCg -3'
miRNA:   3'- -GAAGGCGuaugUGGGGUGGGa-UG-GCG- -5'
5475 3' -55.8 NC_001798.1 + 27953 0.72 0.599767
Target:  5'- --gCCGCGccccgGCGCUCCAgCCgUGCCGCg -3'
miRNA:   3'- gaaGGCGUa----UGUGGGGU-GGgAUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 21632 0.72 0.609936
Target:  5'- -aUCCGgGUGCgucgguGCCCCGCUC-GCCGCc -3'
miRNA:   3'- gaAGGCgUAUG------UGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 150879 0.72 0.609936
Target:  5'- gUUCCGCGggucgcccccGCACCgCCGCCC--CCGCg -3'
miRNA:   3'- gAAGGCGUa---------UGUGG-GGUGGGauGGCG- -5'
5475 3' -55.8 NC_001798.1 + 5746 0.72 0.616046
Target:  5'- --cCCGCGUcaucccGCGCUCCGCCCcaaagggggcgggGCCGCa -3'
miRNA:   3'- gaaGGCGUA------UGUGGGGUGGGa------------UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 87737 0.72 0.620121
Target:  5'- --cCCGCcgGCccgaACCCCgcgGCCCUgaGCCGCg -3'
miRNA:   3'- gaaGGCGuaUG----UGGGG---UGGGA--UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 9489 0.72 0.630316
Target:  5'- -gUCCGCGUACAgCUCGCUgU-CCGCc -3'
miRNA:   3'- gaAGGCGUAUGUgGGGUGGgAuGGCG- -5'
5475 3' -55.8 NC_001798.1 + 24722 0.72 0.630316
Target:  5'- --cCCGCGgGCGCggCCGCCCcGCCGCa -3'
miRNA:   3'- gaaGGCGUaUGUGg-GGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 27452 0.72 0.630316
Target:  5'- -gUCUGCGgcacagccUGCuaguCCCCGUCCUGCCGCg -3'
miRNA:   3'- gaAGGCGU--------AUGu---GGGGUGGGAUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 5345 0.72 0.650701
Target:  5'- --aCCGCAUuauGCgcgGCCCCGCCCcgacgcCCGCg -3'
miRNA:   3'- gaaGGCGUA---UG---UGGGGUGGGau----GGCG- -5'
5475 3' -55.8 NC_001798.1 + 82700 0.72 0.650701
Target:  5'- -cUCCGC--GC-CCCCACCCgcaucGCUGCu -3'
miRNA:   3'- gaAGGCGuaUGuGGGGUGGGa----UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 23487 0.71 0.660875
Target:  5'- --gCCGCccGCGcCCCCGCCagcGCCGCa -3'
miRNA:   3'- gaaGGCGuaUGU-GGGGUGGga-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.