miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5476 3' -55.6 NC_001798.1 + 154510 0.66 0.938419
Target:  5'- cGCGCGCcGCgGGGcugccuucccGCGGGcgcCCCCGCGc -3'
miRNA:   3'- aCGUGUGcUGgUUU----------UGCCU---GGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 154407 0.71 0.707079
Target:  5'- gGCGgGCGGCgGcgGCGGgcgggcggcagggcaGCCCCGCGc -3'
miRNA:   3'- aCGUgUGCUGgUuuUGCC---------------UGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 154281 0.66 0.911692
Target:  5'- gUGCGCAgcccgGGCCGuguuGCGGGCCCUcuuaagggGCGg -3'
miRNA:   3'- -ACGUGUg----CUGGUuu--UGCCUGGGG--------CGC- -5'
5476 3' -55.6 NC_001798.1 + 154100 0.75 0.492765
Target:  5'- gGgGCGCGGCCGGcGCcggGGACCCCgGCGg -3'
miRNA:   3'- aCgUGUGCUGGUUuUG---CCUGGGG-CGC- -5'
5476 3' -55.6 NC_001798.1 + 153445 0.69 0.8047
Target:  5'- gGCGCGCGGCCGucucccaggccaccAGAUGGcGCaCCUGCa -3'
miRNA:   3'- aCGUGUGCUGGU--------------UUUGCC-UG-GGGCGc -5'
5476 3' -55.6 NC_001798.1 + 153235 0.66 0.938419
Target:  5'- gGCcCGCGGCgGcggaGGACCCgCGCGc -3'
miRNA:   3'- aCGuGUGCUGgUuuugCCUGGG-GCGC- -5'
5476 3' -55.6 NC_001798.1 + 153155 0.66 0.933547
Target:  5'- cGCGCA-GACCuucgGAGCuccgGGGCUCCGCc -3'
miRNA:   3'- aCGUGUgCUGGu---UUUG----CCUGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 153003 0.68 0.863804
Target:  5'- gGCGCgggGCGgucGCCGGGGCGGaguccggGCCCgCGCGg -3'
miRNA:   3'- aCGUG---UGC---UGGUUUUGCC-------UGGG-GCGC- -5'
5476 3' -55.6 NC_001798.1 + 152651 0.7 0.732741
Target:  5'- cGCcgGCGCGGCCcuGAGUGGugCCCGCc -3'
miRNA:   3'- aCG--UGUGCUGGu-UUUGCCugGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 152057 0.7 0.732741
Target:  5'- gGCGCACGGCCc--ACGGGggucCCCCGa- -3'
miRNA:   3'- aCGUGUGCUGGuuuUGCCU----GGGGCgc -5'
5476 3' -55.6 NC_001798.1 + 151840 0.74 0.551344
Target:  5'- gGCGCGgGGCgUGAGGCGGGacCCCCGCGc -3'
miRNA:   3'- aCGUGUgCUG-GUUUUGCCU--GGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 151604 0.69 0.807343
Target:  5'- gGCGCuCGGCCGGGGgcCGGGCCgggggcguggCCGCGu -3'
miRNA:   3'- aCGUGuGCUGGUUUU--GCCUGG----------GGCGC- -5'
5476 3' -55.6 NC_001798.1 + 150750 0.67 0.87122
Target:  5'- gGCACgACGGCCGcGACGGcagggccGCCCC-Ca -3'
miRNA:   3'- aCGUG-UGCUGGUuUUGCC-------UGGGGcGc -5'
5476 3' -55.6 NC_001798.1 + 150608 0.66 0.933547
Target:  5'- cGCugAUGACUAugggGGGCuccuGGGCCgCGCGg -3'
miRNA:   3'- aCGugUGCUGGU----UUUG----CCUGGgGCGC- -5'
5476 3' -55.6 NC_001798.1 + 150426 0.68 0.849148
Target:  5'- gGCG-GCGGCgCGGGGCGGACUCCGg- -3'
miRNA:   3'- aCGUgUGCUG-GUUUUGCCUGGGGCgc -5'
5476 3' -55.6 NC_001798.1 + 150370 0.71 0.713045
Target:  5'- gGCACgGCGGgCGGcGCGGGCCCgGCc -3'
miRNA:   3'- aCGUG-UGCUgGUUuUGCCUGGGgCGc -5'
5476 3' -55.6 NC_001798.1 + 149970 0.69 0.824593
Target:  5'- aGaCGC-CGACgGGGGCGcGGCgCCCGCGg -3'
miRNA:   3'- aC-GUGuGCUGgUUUUGC-CUG-GGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 149718 0.72 0.642422
Target:  5'- gGCACACuuCCu---CGGcCCCCGCGg -3'
miRNA:   3'- aCGUGUGcuGGuuuuGCCuGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 149649 0.73 0.611865
Target:  5'- aGCGCGugaGGCCGGGcgccgggucGCGGGCCCCGgGc -3'
miRNA:   3'- aCGUGUg--CUGGUUU---------UGCCUGGGGCgC- -5'
5476 3' -55.6 NC_001798.1 + 149606 0.68 0.864555
Target:  5'- gGCGcCAgGGCCAcGACGcucgaGAcCCCCGCGa -3'
miRNA:   3'- aCGU-GUgCUGGUuUUGC-----CU-GGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.