miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5480 5' -60.4 NC_001798.1 + 154543 0.74 0.345646
Target:  5'- cCCGCGCGGCUuuuUUCCCGCGCCcGCCc -3'
miRNA:   3'- -GGUGUGUCGGcc-AGGGGUGCGGcUGG- -5'
5480 5' -60.4 NC_001798.1 + 154467 0.7 0.561031
Target:  5'- cCCcCGgAGCCGGccgcUCCCCcgcggGCGCCGcCCc -3'
miRNA:   3'- -GGuGUgUCGGCC----AGGGG-----UGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 153446 0.73 0.399908
Target:  5'- gCGCGCGGCC-GUCuCCCAgGCC-ACCa -3'
miRNA:   3'- gGUGUGUCGGcCAG-GGGUgCGGcUGG- -5'
5480 5' -60.4 NC_001798.1 + 153397 0.66 0.762452
Target:  5'- aCCGguCGCGGUCGG-CCCgcucgCGCGCCcagGACCc -3'
miRNA:   3'- -GGU--GUGUCGGCCaGGG-----GUGCGG---CUGG- -5'
5480 5' -60.4 NC_001798.1 + 153237 0.7 0.551465
Target:  5'- cCCGCgGCGGCggaGGaCCCgCGCGCCGccGCCg -3'
miRNA:   3'- -GGUG-UGUCGg--CCaGGG-GUGCGGC--UGG- -5'
5480 5' -60.4 NC_001798.1 + 153153 0.68 0.677623
Target:  5'- cUCGCGCAGaccuucggagcuCCGGggCUC-CGCCGGCCg -3'
miRNA:   3'- -GGUGUGUC------------GGCCagGGGuGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 153035 0.7 0.523086
Target:  5'- cCCGCGCGGCggcgcgCGGUUggCCgGCGCCGcCCc -3'
miRNA:   3'- -GGUGUGUCG------GCCAG--GGgUGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 152604 0.66 0.789124
Target:  5'- gCAUGC-GCCGc-CCCC-CGCCGACg -3'
miRNA:   3'- gGUGUGuCGGCcaGGGGuGCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 152058 0.71 0.47713
Target:  5'- gCGCACGGCCcacgggGGUCCCC-CGaCCGcuuaagcggGCCg -3'
miRNA:   3'- gGUGUGUCGG------CCAGGGGuGC-GGC---------UGG- -5'
5480 5' -60.4 NC_001798.1 + 151841 0.69 0.580294
Target:  5'- gCGCGgGGCgugaggCGGgacCCCCGCGCCGugUc -3'
miRNA:   3'- gGUGUgUCG------GCCa--GGGGUGCGGCugG- -5'
5480 5' -60.4 NC_001798.1 + 151277 0.75 0.290357
Target:  5'- cCCGCACGGCCgccucGGcCUCCACGCgGGuCCg -3'
miRNA:   3'- -GGUGUGUCGG-----CCaGGGGUGCGgCU-GG- -5'
5480 5' -60.4 NC_001798.1 + 150894 0.76 0.265418
Target:  5'- cCCGCACcGCCGc-CCCCGCGCCGGg- -3'
miRNA:   3'- -GGUGUGuCGGCcaGGGGUGCGGCUgg -5'
5480 5' -60.4 NC_001798.1 + 150695 0.74 0.353066
Target:  5'- cCCGCGCGccuGCgCGcGcCCCC-CGCCGGCCg -3'
miRNA:   3'- -GGUGUGU---CG-GC-CaGGGGuGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 150270 0.71 0.486168
Target:  5'- cCCGCGCGcGUCGGUCgcgCCUGC-CCGGCCc -3'
miRNA:   3'- -GGUGUGU-CGGCCAG---GGGUGcGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 150225 0.66 0.753341
Target:  5'- gCCGCGgGGgaccCCGGguccuccCUCCGCGCcCGGCCc -3'
miRNA:   3'- -GGUGUgUC----GGCCa------GGGGUGCG-GCUGG- -5'
5480 5' -60.4 NC_001798.1 + 150136 0.67 0.695952
Target:  5'- gCCGCGgGGcCCGaGUCcgaCCCGCGCCucuuccgggggcgGGCCg -3'
miRNA:   3'- -GGUGUgUC-GGC-CAG---GGGUGCGG-------------CUGG- -5'
5480 5' -60.4 NC_001798.1 + 149659 0.66 0.771459
Target:  5'- gCCGgGC-GCCGGgucgcgggCCCCGgGCUcggGGCCg -3'
miRNA:   3'- -GGUgUGuCGGCCa-------GGGGUgCGG---CUGG- -5'
5480 5' -60.4 NC_001798.1 + 149486 0.67 0.696912
Target:  5'- gCC-CGCAGCaGGUCCgCCACGUUccCCg -3'
miRNA:   3'- -GGuGUGUCGgCCAGG-GGUGCGGcuGG- -5'
5480 5' -60.4 NC_001798.1 + 147950 0.68 0.651378
Target:  5'- cCCACGC-GCCGGUcacccccCCCCaacaaccccaaaggcGCGugcCCGGCCa -3'
miRNA:   3'- -GGUGUGuCGGCCA-------GGGG---------------UGC---GGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 147233 0.69 0.580294
Target:  5'- -aGCGCGGgggccCCGGggCCCCGgGCCGcGCCg -3'
miRNA:   3'- ggUGUGUC-----GGCCa-GGGGUgCGGC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.