miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 3' -64.5 NC_001798.1 + 134916 0.66 0.578325
Target:  5'- ---cCGGcCGCCGCCGcCGCCgagUCGGCg- -3'
miRNA:   3'- gcuaGCU-GCGGCGGC-GCGG---GGCCGag -5'
5487 3' -64.5 NC_001798.1 + 77778 0.66 0.578325
Target:  5'- uGGUCGagcuGCGCCGCCuGCagGCgCUGGCg- -3'
miRNA:   3'- gCUAGC----UGCGGCGG-CG--CGgGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 109100 0.66 0.578325
Target:  5'- aCGGcUCGGCGCUGgaCGCcCUCCGGCg- -3'
miRNA:   3'- -GCU-AGCUGCGGCg-GCGcGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 25056 0.66 0.578325
Target:  5'- gGcgCGcaaGCGCaagaGCCcCGCCCCGGC-Ca -3'
miRNA:   3'- gCuaGC---UGCGg---CGGcGCGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 24908 0.66 0.578325
Target:  5'- ---cCGGCGCUGCCGCGgagCCCGcGCc- -3'
miRNA:   3'- gcuaGCUGCGGCGGCGCg--GGGC-CGag -5'
5487 3' -64.5 NC_001798.1 + 1366 0.66 0.578325
Target:  5'- cCGccgCGcACGgCGUCGCGCCCCaGCg- -3'
miRNA:   3'- -GCua-GC-UGCgGCGGCGCGGGGcCGag -5'
5487 3' -64.5 NC_001798.1 + 105212 0.66 0.577375
Target:  5'- gCGA-CGGCGCUGCCccguccgcaGCGCCCuccccccucgccuCGGCg- -3'
miRNA:   3'- -GCUaGCUGCGGCGG---------CGCGGG-------------GCCGag -5'
5487 3' -64.5 NC_001798.1 + 123391 0.66 0.577375
Target:  5'- aGG-CGACGCCaggccccccgggaGCCGCgGCCCCgccGGgUCa -3'
miRNA:   3'- gCUaGCUGCGG-------------CGGCG-CGGGG---CCgAG- -5'
5487 3' -64.5 NC_001798.1 + 128171 0.66 0.575476
Target:  5'- uGcgCGGCGuCCGCuccccucuggccauCGgGCCCCugugGGCUCg -3'
miRNA:   3'- gCuaGCUGC-GGCG--------------GCgCGGGG----CCGAG- -5'
5487 3' -64.5 NC_001798.1 + 91826 0.66 0.574527
Target:  5'- gCGGggccCGACGCCgccccucccagcacGCCGUacauauaccggccGCCCCGGC-Cg -3'
miRNA:   3'- -GCUa---GCUGCGG--------------CGGCG-------------CGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 43259 0.66 0.568842
Target:  5'- gCGAUCGcCGggggCGUCGUGCCCUGcuGCUCc -3'
miRNA:   3'- -GCUAGCuGCg---GCGGCGCGGGGC--CGAG- -5'
5487 3' -64.5 NC_001798.1 + 67600 0.66 0.568842
Target:  5'- uCGuUCgGACGgaGaCCGCGCUCCGGCg- -3'
miRNA:   3'- -GCuAG-CUGCggC-GGCGCGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 105394 0.66 0.568842
Target:  5'- aGggCGGCguucuccaggGCCGCCGCGgCCgCGGUg- -3'
miRNA:   3'- gCuaGCUG----------CGGCGGCGCgGG-GCCGag -5'
5487 3' -64.5 NC_001798.1 + 114816 0.66 0.568842
Target:  5'- aCGG-CGACGCagccguccgugGCCGUGCCCCGcCUg -3'
miRNA:   3'- -GCUaGCUGCGg----------CGGCGCGGGGCcGAg -5'
5487 3' -64.5 NC_001798.1 + 127005 0.66 0.568842
Target:  5'- gCGAUCgGACGCgGUguCGCUCCGGC-Cg -3'
miRNA:   3'- -GCUAG-CUGCGgCGgcGCGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 3735 0.66 0.567895
Target:  5'- uGAUCagGGCGUacugcugCGCCGCGUcgCCCaGCUCg -3'
miRNA:   3'- gCUAG--CUGCG-------GCGGCGCG--GGGcCGAG- -5'
5487 3' -64.5 NC_001798.1 + 69313 0.66 0.559398
Target:  5'- aCGGUCa--GCCcucCCGCGCgCCgGGCUCc -3'
miRNA:   3'- -GCUAGcugCGGc--GGCGCG-GGgCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 31202 0.66 0.559398
Target:  5'- cCGAcCGGCGCCcCCugGCGCCCCGcggaGCa- -3'
miRNA:   3'- -GCUaGCUGCGGcGG--CGCGGGGC----CGag -5'
5487 3' -64.5 NC_001798.1 + 15562 0.66 0.559398
Target:  5'- ----gGGCGuuGCCGcCGCCgCGGCg- -3'
miRNA:   3'- gcuagCUGCggCGGC-GCGGgGCCGag -5'
5487 3' -64.5 NC_001798.1 + 109685 0.66 0.559398
Target:  5'- ----gGGCGCCGUuccuggcgggCGCGCCCuCGGC-Cg -3'
miRNA:   3'- gcuagCUGCGGCG----------GCGCGGG-GCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.