miRNA display CGI


Results 21 - 40 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 3' -64.5 NC_001798.1 + 134787 0.71 0.280243
Target:  5'- aCGGUCcACGCCGCCcccggaGCCCUGGCc- -3'
miRNA:   3'- -GCUAGcUGCGGCGGcg----CGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 134417 0.69 0.378166
Target:  5'- aGGUCGACGUCGacccgcuggcccuguCCGCGCgcgucgccgagcacCCCGGCg- -3'
miRNA:   3'- gCUAGCUGCGGC---------------GGCGCG--------------GGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 134302 0.67 0.494792
Target:  5'- --uUCGuC-CCGCUGCGCCUgGGCUg -3'
miRNA:   3'- gcuAGCuGcGGCGGCGCGGGgCCGAg -5'
5487 3' -64.5 NC_001798.1 + 134162 0.67 0.502922
Target:  5'- cCGGggcCGuCGCgGCCGCccgcgccgcgacgGCCCCGGC-Cg -3'
miRNA:   3'- -GCUa--GCuGCGgCGGCG-------------CGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 131329 0.71 0.312483
Target:  5'- ---aCcACGCCGcCCGCGCCCCgGGCg- -3'
miRNA:   3'- gcuaGcUGCGGC-GGCGCGGGG-CCGag -5'
5487 3' -64.5 NC_001798.1 + 128171 0.66 0.575476
Target:  5'- uGcgCGGCGuCCGCuccccucuggccauCGgGCCCCugugGGCUCg -3'
miRNA:   3'- gCuaGCUGC-GGCG--------------GCgCGGGG----CCGAG- -5'
5487 3' -64.5 NC_001798.1 + 127005 0.66 0.568842
Target:  5'- gCGAUCgGACGCgGUguCGCUCCGGC-Cg -3'
miRNA:   3'- -GCUAG-CUGCGgCGgcGCGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 126301 0.7 0.347459
Target:  5'- aGA-CGGCGCCGUCuccggagccCGCCCCGGgUCc -3'
miRNA:   3'- gCUaGCUGCGGCGGc--------GCGGGGCCgAG- -5'
5487 3' -64.5 NC_001798.1 + 124079 0.66 0.522113
Target:  5'- gGAggaGGCGgCGCCuGCGCCCCgacGGCcCa -3'
miRNA:   3'- gCUag-CUGCgGCGG-CGCGGGG---CCGaG- -5'
5487 3' -64.5 NC_001798.1 + 123391 0.66 0.577375
Target:  5'- aGG-CGACGCCaggccccccgggaGCCGCgGCCCCgccGGgUCa -3'
miRNA:   3'- gCUaGCUGCGG-------------CGGCG-CGGGG---CCgAG- -5'
5487 3' -64.5 NC_001798.1 + 122511 0.66 0.531351
Target:  5'- nCGAggGaccccuGCGCCacCCGCGCCCCGuGCUg -3'
miRNA:   3'- -GCUagC------UGCGGc-GGCGCGGGGC-CGAg -5'
5487 3' -64.5 NC_001798.1 + 122481 0.73 0.223779
Target:  5'- aGA-CGGCGCUGCUGCGUcgcuuuCCCGcGCUCg -3'
miRNA:   3'- gCUaGCUGCGGCGGCGCG------GGGC-CGAG- -5'
5487 3' -64.5 NC_001798.1 + 122370 0.67 0.46814
Target:  5'- gCGggCGACG-CGCC-CGCCCCccgcGGCUg -3'
miRNA:   3'- -GCuaGCUGCgGCGGcGCGGGG----CCGAg -5'
5487 3' -64.5 NC_001798.1 + 121536 0.68 0.417181
Target:  5'- aCGGUCG-CGgCGCUGCGCC-UGGCg- -3'
miRNA:   3'- -GCUAGCuGCgGCGGCGCGGgGCCGag -5'
5487 3' -64.5 NC_001798.1 + 119455 0.71 0.292812
Target:  5'- uCGA-CGGCGCCGCCGUuguGCaauCCGGCg- -3'
miRNA:   3'- -GCUaGCUGCGGCGGCG---CGg--GGCCGag -5'
5487 3' -64.5 NC_001798.1 + 117547 0.67 0.501111
Target:  5'- cCGGUCuuuggcugcgcccaGGUGCCGCgGCGCgCCGGCa- -3'
miRNA:   3'- -GCUAG--------------CUGCGGCGgCGCGgGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 116770 0.72 0.245112
Target:  5'- aCGA-CGGCGCUGCUGUGCuCCgCGGCg- -3'
miRNA:   3'- -GCUaGCUGCGGCGGCGCG-GG-GCCGag -5'
5487 3' -64.5 NC_001798.1 + 116429 0.71 0.312483
Target:  5'- gCGGcCGACGCCGCCGaCGa-CCGGC-Cg -3'
miRNA:   3'- -GCUaGCUGCGGCGGC-GCggGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 115521 0.67 0.50383
Target:  5'- gGggCGuACGUCGCgGCcccggccgGCCCCGGCg- -3'
miRNA:   3'- gCuaGC-UGCGGCGgCG--------CGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 114816 0.66 0.568842
Target:  5'- aCGG-CGACGCagccguccgugGCCGUGCCCCGcCUg -3'
miRNA:   3'- -GCUaGCUGCGg----------CGGCGCGGGGCcGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.