Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5488 | 5' | -50.1 | NC_001798.1 | + | 124508 | 0.66 | 0.994403 |
Target: 5'- -----gGGGGgGGGGcUGCGGGCGUg- -3' miRNA: 3'- uaauaaUCCCgUUUC-ACGCUCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 144574 | 0.66 | 0.993487 |
Target: 5'- -----aAGGGCGAGGa-CGGGCgGCUGg -3' miRNA: 3'- uaauaaUCCCGUUUCacGCUCG-CGAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 1439 | 0.66 | 0.992456 |
Target: 5'- -------aGGCGcGGUGCGAGUGCg- -3' miRNA: 3'- uaauaaucCCGUuUCACGCUCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 29904 | 0.67 | 0.988565 |
Target: 5'- --gGUUGGGGguG-GUcGCGGGCGgUGg -3' miRNA: 3'- uaaUAAUCCCguUuCA-CGCUCGCgAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 15082 | 0.67 | 0.988565 |
Target: 5'- uUUGUUGGGGUucggaguucgGAAG-GCGAggccggugGCGCUGu -3' miRNA: 3'- uAAUAAUCCCG----------UUUCaCGCU--------CGCGAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 2240 | 0.67 | 0.985208 |
Target: 5'- ------cGGGcCGAAGgcgGCGGGCGCg- -3' miRNA: 3'- uaauaauCCC-GUUUCa--CGCUCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 136141 | 0.67 | 0.983271 |
Target: 5'- ----gUGGGGCGAGG-GCGGGaGCUu -3' miRNA: 3'- uaauaAUCCCGUUUCaCGCUCgCGAc -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 153761 | 0.67 | 0.983271 |
Target: 5'- ----gUGGGGCGGAa-GgGGGCGCUGc -3' miRNA: 3'- uaauaAUCCCGUUUcaCgCUCGCGAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 43498 | 0.67 | 0.983271 |
Target: 5'- -----cGGGGCAuacGUGCGcGCGCg- -3' miRNA: 3'- uaauaaUCCCGUuu-CACGCuCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 148267 | 0.67 | 0.983271 |
Target: 5'- -----cAGGGUAAGGagggGCGGGCGUg- -3' miRNA: 3'- uaauaaUCCCGUUUCa---CGCUCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 98111 | 0.67 | 0.983271 |
Target: 5'- ----aUGGGcGCGGGGgguuCGGGCGCUGa -3' miRNA: 3'- uaauaAUCC-CGUUUCac--GCUCGCGAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 148398 | 0.67 | 0.981148 |
Target: 5'- ------cGGGCAGGuGUGCGGGCGg-- -3' miRNA: 3'- uaauaauCCCGUUU-CACGCUCGCgac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 148298 | 0.68 | 0.976305 |
Target: 5'- -gUGUgcGGGCGGGGUgggGUGAGUGCg- -3' miRNA: 3'- uaAUAauCCCGUUUCA---CGCUCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 146089 | 0.68 | 0.973568 |
Target: 5'- -----cGGGGCGAGGcggGCGGGCGaaGg -3' miRNA: 3'- uaauaaUCCCGUUUCa--CGCUCGCgaC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 130407 | 0.68 | 0.973568 |
Target: 5'- -----gAGGGCAAAGgcgGCGAcgaGCGCc- -3' miRNA: 3'- uaauaaUCCCGUUUCa--CGCU---CGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 148510 | 0.68 | 0.967419 |
Target: 5'- -----gGGGGCAGAGgGCGugcauGCGUUGu -3' miRNA: 3'- uaauaaUCCCGUUUCaCGCu----CGCGAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 85829 | 0.69 | 0.963992 |
Target: 5'- -----gGGGGCGGGGgcggGCGGGgGCUc -3' miRNA: 3'- uaauaaUCCCGUUUCa---CGCUCgCGAc -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 32717 | 0.69 | 0.963992 |
Target: 5'- -----cAGGGCAcccuGGUGgGcGCGCUGg -3' miRNA: 3'- uaauaaUCCCGUu---UCACgCuCGCGAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 97537 | 0.69 | 0.96032 |
Target: 5'- -----gGGGGCGGAG-GCGuGGCGCg- -3' miRNA: 3'- uaauaaUCCCGUUUCaCGC-UCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 2268 | 0.69 | 0.96032 |
Target: 5'- -----gGGGGCGGGGcgGCGcAGCGCg- -3' miRNA: 3'- uaauaaUCCCGUUUCa-CGC-UCGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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