miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5488 5' -50.1 NC_001798.1 + 124508 0.66 0.994403
Target:  5'- -----gGGGGgGGGGcUGCGGGCGUg- -3'
miRNA:   3'- uaauaaUCCCgUUUC-ACGCUCGCGac -5'
5488 5' -50.1 NC_001798.1 + 144574 0.66 0.993487
Target:  5'- -----aAGGGCGAGGa-CGGGCgGCUGg -3'
miRNA:   3'- uaauaaUCCCGUUUCacGCUCG-CGAC- -5'
5488 5' -50.1 NC_001798.1 + 1439 0.66 0.992456
Target:  5'- -------aGGCGcGGUGCGAGUGCg- -3'
miRNA:   3'- uaauaaucCCGUuUCACGCUCGCGac -5'
5488 5' -50.1 NC_001798.1 + 29904 0.67 0.988565
Target:  5'- --gGUUGGGGguG-GUcGCGGGCGgUGg -3'
miRNA:   3'- uaaUAAUCCCguUuCA-CGCUCGCgAC- -5'
5488 5' -50.1 NC_001798.1 + 15082 0.67 0.988565
Target:  5'- uUUGUUGGGGUucggaguucgGAAG-GCGAggccggugGCGCUGu -3'
miRNA:   3'- uAAUAAUCCCG----------UUUCaCGCU--------CGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 2240 0.67 0.985208
Target:  5'- ------cGGGcCGAAGgcgGCGGGCGCg- -3'
miRNA:   3'- uaauaauCCC-GUUUCa--CGCUCGCGac -5'
5488 5' -50.1 NC_001798.1 + 136141 0.67 0.983271
Target:  5'- ----gUGGGGCGAGG-GCGGGaGCUu -3'
miRNA:   3'- uaauaAUCCCGUUUCaCGCUCgCGAc -5'
5488 5' -50.1 NC_001798.1 + 153761 0.67 0.983271
Target:  5'- ----gUGGGGCGGAa-GgGGGCGCUGc -3'
miRNA:   3'- uaauaAUCCCGUUUcaCgCUCGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 43498 0.67 0.983271
Target:  5'- -----cGGGGCAuacGUGCGcGCGCg- -3'
miRNA:   3'- uaauaaUCCCGUuu-CACGCuCGCGac -5'
5488 5' -50.1 NC_001798.1 + 148267 0.67 0.983271
Target:  5'- -----cAGGGUAAGGagggGCGGGCGUg- -3'
miRNA:   3'- uaauaaUCCCGUUUCa---CGCUCGCGac -5'
5488 5' -50.1 NC_001798.1 + 98111 0.67 0.983271
Target:  5'- ----aUGGGcGCGGGGgguuCGGGCGCUGa -3'
miRNA:   3'- uaauaAUCC-CGUUUCac--GCUCGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 148398 0.67 0.981148
Target:  5'- ------cGGGCAGGuGUGCGGGCGg-- -3'
miRNA:   3'- uaauaauCCCGUUU-CACGCUCGCgac -5'
5488 5' -50.1 NC_001798.1 + 148298 0.68 0.976305
Target:  5'- -gUGUgcGGGCGGGGUgggGUGAGUGCg- -3'
miRNA:   3'- uaAUAauCCCGUUUCA---CGCUCGCGac -5'
5488 5' -50.1 NC_001798.1 + 146089 0.68 0.973568
Target:  5'- -----cGGGGCGAGGcggGCGGGCGaaGg -3'
miRNA:   3'- uaauaaUCCCGUUUCa--CGCUCGCgaC- -5'
5488 5' -50.1 NC_001798.1 + 130407 0.68 0.973568
Target:  5'- -----gAGGGCAAAGgcgGCGAcgaGCGCc- -3'
miRNA:   3'- uaauaaUCCCGUUUCa--CGCU---CGCGac -5'
5488 5' -50.1 NC_001798.1 + 148510 0.68 0.967419
Target:  5'- -----gGGGGCAGAGgGCGugcauGCGUUGu -3'
miRNA:   3'- uaauaaUCCCGUUUCaCGCu----CGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 85829 0.69 0.963992
Target:  5'- -----gGGGGCGGGGgcggGCGGGgGCUc -3'
miRNA:   3'- uaauaaUCCCGUUUCa---CGCUCgCGAc -5'
5488 5' -50.1 NC_001798.1 + 32717 0.69 0.963992
Target:  5'- -----cAGGGCAcccuGGUGgGcGCGCUGg -3'
miRNA:   3'- uaauaaUCCCGUu---UCACgCuCGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 97537 0.69 0.96032
Target:  5'- -----gGGGGCGGAG-GCGuGGCGCg- -3'
miRNA:   3'- uaauaaUCCCGUUUCaCGC-UCGCGac -5'
5488 5' -50.1 NC_001798.1 + 2268 0.69 0.96032
Target:  5'- -----gGGGGCGGGGcgGCGcAGCGCg- -3'
miRNA:   3'- uaauaaUCCCGUUUCa-CGC-UCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.