miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5490 3' -57.8 NC_001798.1 + 150487 0.84 0.101181
Target:  5'- cGCCccgacgACUGUGGCAGACcuccCCCCCCGGGg -3'
miRNA:   3'- -CGG------UGAUACCGUCUGua--GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 25603 0.8 0.177257
Target:  5'- gGCCGCgccgggGGCGGGCc-CCCCCCGGAg -3'
miRNA:   3'- -CGGUGaua---CCGUCUGuaGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 88050 0.79 0.195674
Target:  5'- gGCCGCUGggggGGCGGGCucgUCCCCUGGGg -3'
miRNA:   3'- -CGGUGAUa---CCGUCUGua-GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 85009 0.76 0.314087
Target:  5'- cCCGCUcgaccggccAUGGC-GACGUCCgCCCCGGGg -3'
miRNA:   3'- cGGUGA---------UACCGuCUGUAGG-GGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 132143 0.75 0.343445
Target:  5'- cGCCGCcgggggccGGCGGGCGgggcgccCCCCCCGGAc -3'
miRNA:   3'- -CGGUGaua-----CCGUCUGUa------GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 111064 0.75 0.364353
Target:  5'- cGCCgagguacaugacguGCUcgGGCgAGACGgacCCCCCCGGGg -3'
miRNA:   3'- -CGG--------------UGAuaCCG-UCUGUa--GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 11626 0.74 0.425138
Target:  5'- cGCCGCUcgcgGGCgcGGGCGUCCcuguguCCCCGGGg -3'
miRNA:   3'- -CGGUGAua--CCG--UCUGUAGG------GGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 16083 0.73 0.433926
Target:  5'- cGUCugUGggGGCAGACAgCgCUCCCGGAa -3'
miRNA:   3'- -CGGugAUa-CCGUCUGUaG-GGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 78294 0.73 0.470095
Target:  5'- cGCCGCg--GaGCAGAUAUCCgcggCCCGGAa -3'
miRNA:   3'- -CGGUGauaC-CGUCUGUAGGg---GGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 116991 0.73 0.478444
Target:  5'- gGCC-CUGcgcgaccUGGCGcgcGACGUCCCCCUGGu -3'
miRNA:   3'- -CGGuGAU-------ACCGU---CUGUAGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 152240 0.73 0.479376
Target:  5'- gGCCGCUcggGGCcGGgGUCCgCCCGGGa -3'
miRNA:   3'- -CGGUGAua-CCGuCUgUAGGgGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 67318 0.72 0.488747
Target:  5'- cGCCACgacGGCGGuucggcCAUCCCCgCCGGc -3'
miRNA:   3'- -CGGUGauaCCGUCu-----GUAGGGG-GGCCu -5'
5490 3' -57.8 NC_001798.1 + 75187 0.72 0.517351
Target:  5'- -aCGCUGggGGCccGCcgCCCCCCGGAg -3'
miRNA:   3'- cgGUGAUa-CCGucUGuaGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 31379 0.72 0.525093
Target:  5'- cGCCGCggcggcggagGGCAGGacgCCCCCCGcGAg -3'
miRNA:   3'- -CGGUGaua-------CCGUCUguaGGGGGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 85179 0.72 0.527036
Target:  5'- gGCCugUcacGUGGUAGGCGUgCCgCCCGcGAg -3'
miRNA:   3'- -CGGugA---UACCGUCUGUAgGG-GGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 103187 0.72 0.527036
Target:  5'- -gCGgUcgGGCGGAaccuCGUCCCCCCGGc -3'
miRNA:   3'- cgGUgAuaCCGUCU----GUAGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 29017 0.71 0.566392
Target:  5'- cGCCGCgcgGGCccGGAC-UCCgCCCCGGc -3'
miRNA:   3'- -CGGUGauaCCG--UCUGuAGG-GGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 51476 0.71 0.583357
Target:  5'- gGCCGC-GUGucgggcccggagcuGCAGGCGgcauUCCCCCUGGAc -3'
miRNA:   3'- -CGGUGaUAC--------------CGUCUGU----AGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 135279 0.71 0.586362
Target:  5'- -gCGCUgGUGGCGGcCGcCCCCUCGGAg -3'
miRNA:   3'- cgGUGA-UACCGUCuGUaGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 104283 0.71 0.590373
Target:  5'- cGCCGCUuuuuAUGGCgcccgaguccaauccGGACG-CCCCCCGa- -3'
miRNA:   3'- -CGGUGA----UACCG---------------UCUGUaGGGGGGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.