miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5490 3' -57.8 NC_001798.1 + 140 0.67 0.808907
Target:  5'- gGCCGCUcccccGCGGGCGccgccccUCCCCCCGc- -3'
miRNA:   3'- -CGGUGAuac--CGUCUGU-------AGGGGGGCcu -5'
5490 3' -57.8 NC_001798.1 + 4113 0.66 0.834209
Target:  5'- gGCC-CUG-GGCGGGC-UCggccggggcgccgCCCCCGGGg -3'
miRNA:   3'- -CGGuGAUaCCGUCUGuAG-------------GGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 5498 0.66 0.842295
Target:  5'- cGUCGCg--GGCGGGCucgcUCCCCugcccuuCCGGGu -3'
miRNA:   3'- -CGGUGauaCCGUCUGu---AGGGG-------GGCCU- -5'
5490 3' -57.8 NC_001798.1 + 7871 0.67 0.801033
Target:  5'- cGCCGCUGUGGCccuggcGGACggCCgCCauGAa -3'
miRNA:   3'- -CGGUGAUACCG------UCUGuaGGgGGgcCU- -5'
5490 3' -57.8 NC_001798.1 + 11626 0.74 0.425138
Target:  5'- cGCCGCUcgcgGGCgcGGGCGUCCcuguguCCCCGGGg -3'
miRNA:   3'- -CGGUGAua--CCG--UCUGUAGG------GGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 12074 0.68 0.736157
Target:  5'- -aCGCgggGGCAGugGUUCCCCaGGGg -3'
miRNA:   3'- cgGUGauaCCGUCugUAGGGGGgCCU- -5'
5490 3' -57.8 NC_001798.1 + 15739 0.7 0.646822
Target:  5'- uGCCAUggcgGUGGCcgacacagggagGGGCGUCUUCuCCGGAg -3'
miRNA:   3'- -CGGUGa---UACCG------------UCUGUAGGGG-GGCCU- -5'
5490 3' -57.8 NC_001798.1 + 16083 0.73 0.433926
Target:  5'- cGUCugUGggGGCAGACAgCgCUCCCGGAa -3'
miRNA:   3'- -CGGugAUa-CCGUCUGUaG-GGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 18942 0.69 0.677
Target:  5'- aCCACgacgGGCcuguuugcgaGGACGaCCCCCUGGAa -3'
miRNA:   3'- cGGUGaua-CCG----------UCUGUaGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 25091 0.66 0.826778
Target:  5'- cGCCGCcg-GGCGGcgccccGCG-CCCCCCGa- -3'
miRNA:   3'- -CGGUGauaCCGUC------UGUaGGGGGGCcu -5'
5490 3' -57.8 NC_001798.1 + 25126 0.66 0.843094
Target:  5'- aGCCGC----GCGGACG-CCCCCCGc- -3'
miRNA:   3'- -CGGUGauacCGUCUGUaGGGGGGCcu -5'
5490 3' -57.8 NC_001798.1 + 25603 0.8 0.177257
Target:  5'- gGCCGCgccgggGGCGGGCc-CCCCCCGGAg -3'
miRNA:   3'- -CGGUGaua---CCGUCUGuaGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 29017 0.71 0.566392
Target:  5'- cGCCGCgcgGGCccGGAC-UCCgCCCCGGc -3'
miRNA:   3'- -CGGUGauaCCG--UCUGuAGG-GGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 31379 0.72 0.525093
Target:  5'- cGCCGCggcggcggagGGCAGGacgCCCCCCGcGAg -3'
miRNA:   3'- -CGGUGaua-------CCGUCUguaGGGGGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 31865 0.7 0.626633
Target:  5'- cGCCGCggagggGGCGG-CGgccCgCCCCCGGAa -3'
miRNA:   3'- -CGGUGaua---CCGUCuGUa--G-GGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 38476 0.67 0.792143
Target:  5'- cCCACgcgcacGCcGGCAUCgCCCCGGAg -3'
miRNA:   3'- cGGUGauac--CGuCUGUAGgGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 42145 0.68 0.726466
Target:  5'- cGCCcagGCUGUGGaGGACGcggaUCUCCCgCGGGg -3'
miRNA:   3'- -CGG---UGAUACCgUCUGU----AGGGGG-GCCU- -5'
5490 3' -57.8 NC_001798.1 + 46398 0.68 0.726466
Target:  5'- cGCCGuCUGgccGGCAGGgccacCGcCCCCCCGGc -3'
miRNA:   3'- -CGGU-GAUa--CCGUCU-----GUaGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 47612 0.66 0.818359
Target:  5'- aGCUguACUAUGGCccg-GUCUCCCCGGc -3'
miRNA:   3'- -CGG--UGAUACCGucugUAGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 51476 0.71 0.583357
Target:  5'- gGCCGC-GUGucgggcccggagcuGCAGGCGgcauUCCCCCUGGAc -3'
miRNA:   3'- -CGGUGaUAC--------------CGUCUGU----AGGGGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.