miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5490 3' -57.8 NC_001798.1 + 61314 0.69 0.686999
Target:  5'- aGCCACUGUacacaggggcGGCGGGCuugggUgUCCCGGAc -3'
miRNA:   3'- -CGGUGAUA----------CCGUCUGua---GgGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 61822 0.68 0.736157
Target:  5'- cGCCGCg--GGCAcGCcuUCgCCCCGGGg -3'
miRNA:   3'- -CGGUGauaCCGUcUGu-AGgGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 67318 0.72 0.488747
Target:  5'- cGCCACgacGGCGGuucggcCAUCCCCgCCGGc -3'
miRNA:   3'- -CGGUGauaCCGUCu-----GUAGGGG-GGCCu -5'
5490 3' -57.8 NC_001798.1 + 70445 0.69 0.677
Target:  5'- aCCGC-AUGGCGGugGcgCUCCCCGaGAc -3'
miRNA:   3'- cGGUGaUACCGUCugUa-GGGGGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 71416 0.67 0.792143
Target:  5'- uGCC-Cgc--GCGGACG-CCCCCCGGc -3'
miRNA:   3'- -CGGuGauacCGUCUGUaGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 74800 0.66 0.825108
Target:  5'- cGCCGCcccgcccccGCAGACA-CCCgCCGGGg -3'
miRNA:   3'- -CGGUGauac-----CGUCUGUaGGGgGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 75187 0.72 0.517351
Target:  5'- -aCGCUGggGGCccGCcgCCCCCCGGAg -3'
miRNA:   3'- cgGUGAUa-CCGucUGuaGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 77789 0.68 0.729382
Target:  5'- cGCCGcCUGcaggcgcUGGCGGGCAcgcacggcuacaaCCCCCGGGa -3'
miRNA:   3'- -CGGU-GAU-------ACCGUCUGUag-----------GGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 78294 0.73 0.470095
Target:  5'- cGCCGCg--GaGCAGAUAUCCgcggCCCGGAa -3'
miRNA:   3'- -CGGUGauaC-CGUCUGUAGGg---GGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 81728 0.68 0.716696
Target:  5'- uGCCGCgcGUGcGCAGG--UCCCgCCGGAc -3'
miRNA:   3'- -CGGUGa-UAC-CGUCUguAGGGgGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 85009 0.76 0.314087
Target:  5'- cCCGCUcgaccggccAUGGC-GACGUCCgCCCCGGGg -3'
miRNA:   3'- cGGUGA---------UACCGuCUGUAGG-GGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 85179 0.72 0.527036
Target:  5'- gGCCugUcacGUGGUAGGCGUgCCgCCCGcGAg -3'
miRNA:   3'- -CGGugA---UACCGUCUGUAgGG-GGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 88050 0.79 0.195674
Target:  5'- gGCCGCUGggggGGCGGGCucgUCCCCUGGGg -3'
miRNA:   3'- -CGGUGAUa---CCGUCUGua-GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 91332 0.69 0.686999
Target:  5'- cGCCGCccgagccGCcGGCuUCCCCCCGGGg -3'
miRNA:   3'- -CGGUGauac---CGuCUGuAGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 91613 0.67 0.792143
Target:  5'- gGCCGCgcuuaugGGCGGcCggCCgCCCGGGu -3'
miRNA:   3'- -CGGUGaua----CCGUCuGuaGGgGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 93148 0.66 0.818359
Target:  5'- gGCCuCggugAUGGCGGGCGacgCCgCCCUGGc -3'
miRNA:   3'- -CGGuGa---UACCGUCUGUa--GG-GGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 96163 0.66 0.850975
Target:  5'- cUCGCcAUGGCGG-CcgCgCCCCCGGc -3'
miRNA:   3'- cGGUGaUACCGUCuGuaG-GGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 102830 0.66 0.858663
Target:  5'- cGgCGCaggGGCAGACuccgCCCCCCa-- -3'
miRNA:   3'- -CgGUGauaCCGUCUGua--GGGGGGccu -5'
5490 3' -57.8 NC_001798.1 + 103187 0.72 0.527036
Target:  5'- -gCGgUcgGGCGGAaccuCGUCCCCCCGGc -3'
miRNA:   3'- cgGUgAuaCCGUCU----GUAGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 104283 0.71 0.590373
Target:  5'- cGCCGCUuuuuAUGGCgcccgaguccaauccGGACG-CCCCCCGa- -3'
miRNA:   3'- -CGGUGA----UACCG---------------UCUGUaGGGGGGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.