miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5490 3' -57.8 NC_001798.1 + 31865 0.7 0.626633
Target:  5'- cGCCGCggagggGGCGG-CGgccCgCCCCCGGAa -3'
miRNA:   3'- -CGGUGaua---CCGUCuGUa--G-GGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 116566 0.7 0.642786
Target:  5'- cGCCACgcugcagaacaugGUGGUcccGGAgAUCgCCCCCGGu -3'
miRNA:   3'- -CGGUGa------------UACCG---UCUgUAG-GGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 15739 0.7 0.646822
Target:  5'- uGCCAUggcgGUGGCcgacacagggagGGGCGUCUUCuCCGGAg -3'
miRNA:   3'- -CGGUGa---UACCG------------UCUGUAGGGG-GGCCU- -5'
5490 3' -57.8 NC_001798.1 + 18942 0.69 0.677
Target:  5'- aCCACgacgGGCcuguuugcgaGGACGaCCCCCUGGAa -3'
miRNA:   3'- cGGUGaua-CCG----------UCUGUaGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 70445 0.69 0.677
Target:  5'- aCCGC-AUGGCGGugGcgCUCCCCGaGAc -3'
miRNA:   3'- cGGUGaUACCGUCugUa-GGGGGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 152609 0.69 0.681005
Target:  5'- cGCCGCcccccgccgacGCAGAUgggaGUCCCCCCGGc -3'
miRNA:   3'- -CGGUGauac-------CGUCUG----UAGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 61314 0.69 0.686999
Target:  5'- aGCCACUGUacacaggggcGGCGGGCuugggUgUCCCGGAc -3'
miRNA:   3'- -CGGUGAUA----------CCGUCUGua---GgGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 91332 0.69 0.686999
Target:  5'- cGCCGCccgagccGCcGGCuUCCCCCCGGGg -3'
miRNA:   3'- -CGGUGauac---CGuCUGuAGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 153045 0.69 0.706855
Target:  5'- gGCgCGCgguUGGCcGGCGccgCCCCCUGGGg -3'
miRNA:   3'- -CG-GUGau-ACCGuCUGUa--GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 81728 0.68 0.716696
Target:  5'- uGCCGCgcGUGcGCAGG--UCCCgCCGGAc -3'
miRNA:   3'- -CGGUGa-UAC-CGUCUguAGGGgGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 133179 0.68 0.725492
Target:  5'- cGCCACg--GGCGu-CAUCCCCacgaucaacgccgCCGGAg -3'
miRNA:   3'- -CGGUGauaCCGUcuGUAGGGG-------------GGCCU- -5'
5490 3' -57.8 NC_001798.1 + 42145 0.68 0.726466
Target:  5'- cGCCcagGCUGUGGaGGACGcggaUCUCCCgCGGGg -3'
miRNA:   3'- -CGG---UGAUACCgUCUGU----AGGGGG-GCCU- -5'
5490 3' -57.8 NC_001798.1 + 46398 0.68 0.726466
Target:  5'- cGCCGuCUGgccGGCAGGgccacCGcCCCCCCGGc -3'
miRNA:   3'- -CGGU-GAUa--CCGUCU-----GUaGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 77789 0.68 0.729382
Target:  5'- cGCCGcCUGcaggcgcUGGCGGGCAcgcacggcuacaaCCCCCGGGa -3'
miRNA:   3'- -CGGU-GAU-------ACCGUCUGUag-----------GGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 61822 0.68 0.736157
Target:  5'- cGCCGCg--GGCAcGCcuUCgCCCCGGGg -3'
miRNA:   3'- -CGGUGauaCCGUcUGu-AGgGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 12074 0.68 0.736157
Target:  5'- -aCGCgggGGCAGugGUUCCCCaGGGg -3'
miRNA:   3'- cgGUGauaCCGUCugUAGGGGGgCCU- -5'
5490 3' -57.8 NC_001798.1 + 126260 0.68 0.744803
Target:  5'- aGCCGCcg-GGCguccGGACGcccaagcggccccUCCCCCCGaGAc -3'
miRNA:   3'- -CGGUGauaCCG----UCUGU-------------AGGGGGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 123373 0.68 0.745759
Target:  5'- gGgCACUcUGGCGuccccaggcGACGccaggCCCCCCGGGa -3'
miRNA:   3'- -CgGUGAuACCGU---------CUGUa----GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 123580 0.68 0.745759
Target:  5'- aGCCGCUGUGcCAGGUggCCCuUCCGGAc -3'
miRNA:   3'- -CGGUGAUACcGUCUGuaGGG-GGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 124037 0.68 0.745759
Target:  5'- cGCCAUUuaggAUGGCugcuauccaGGAUuaccgaCCCCCCGGGa -3'
miRNA:   3'- -CGGUGA----UACCG---------UCUGua----GGGGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.