Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5490 | 3' | -57.8 | NC_001798.1 | + | 112550 | 0.67 | 0.799267 |
Target: 5'- uGCCGCccgcgcguaggguUGUGGcCGGACGgaggaacUCCCCCCacuguGGAu -3' miRNA: 3'- -CGGUG-------------AUACC-GUCUGU-------AGGGGGG-----CCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 121810 | 0.67 | 0.792143 |
Target: 5'- gGCCGUUGUcGGCaccccAGACccccccAUCUCCCCGGAg -3' miRNA: 3'- -CGGUGAUA-CCG-----UCUG------UAGGGGGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 71416 | 0.67 | 0.792143 |
Target: 5'- uGCC-Cgc--GCGGACG-CCCCCCGGc -3' miRNA: 3'- -CGGuGauacCGUCUGUaGGGGGGCCu -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 91613 | 0.67 | 0.792143 |
Target: 5'- gGCCGCgcuuaugGGCGGcCggCCgCCCGGGu -3' miRNA: 3'- -CGGUGaua----CCGUCuGuaGGgGGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 38476 | 0.67 | 0.792143 |
Target: 5'- cCCACgcgcacGCcGGCAUCgCCCCGGAg -3' miRNA: 3'- cGGUGauac--CGuCUGUAGgGGGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 130146 | 0.67 | 0.773951 |
Target: 5'- gGCCACUucGUcGUAGAUcggGUCCCCgUCGGAa -3' miRNA: 3'- -CGGUGA--UAcCGUCUG---UAGGGG-GGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 123373 | 0.68 | 0.745759 |
Target: 5'- gGgCACUcUGGCGuccccaggcGACGccaggCCCCCCGGGa -3' miRNA: 3'- -CgGUGAuACCGU---------CUGUa----GGGGGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 123580 | 0.68 | 0.745759 |
Target: 5'- aGCCGCUGUGcCAGGUggCCCuUCCGGAc -3' miRNA: 3'- -CGGUGAUACcGUCUGuaGGG-GGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 124037 | 0.68 | 0.745759 |
Target: 5'- cGCCAUUuaggAUGGCugcuauccaGGAUuaccgaCCCCCCGGGa -3' miRNA: 3'- -CGGUGA----UACCG---------UCUGua----GGGGGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 126260 | 0.68 | 0.744803 |
Target: 5'- aGCCGCcg-GGCguccGGACGcccaagcggccccUCCCCCCGaGAc -3' miRNA: 3'- -CGGUGauaCCG----UCUGU-------------AGGGGGGC-CU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 12074 | 0.68 | 0.736157 |
Target: 5'- -aCGCgggGGCAGugGUUCCCCaGGGg -3' miRNA: 3'- cgGUGauaCCGUCugUAGGGGGgCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 61822 | 0.68 | 0.736157 |
Target: 5'- cGCCGCg--GGCAcGCcuUCgCCCCGGGg -3' miRNA: 3'- -CGGUGauaCCGUcUGu-AGgGGGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 77789 | 0.68 | 0.729382 |
Target: 5'- cGCCGcCUGcaggcgcUGGCGGGCAcgcacggcuacaaCCCCCGGGa -3' miRNA: 3'- -CGGU-GAU-------ACCGUCUGUag-----------GGGGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 42145 | 0.68 | 0.726466 |
Target: 5'- cGCCcagGCUGUGGaGGACGcggaUCUCCCgCGGGg -3' miRNA: 3'- -CGG---UGAUACCgUCUGU----AGGGGG-GCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 46398 | 0.68 | 0.726466 |
Target: 5'- cGCCGuCUGgccGGCAGGgccacCGcCCCCCCGGc -3' miRNA: 3'- -CGGU-GAUa--CCGUCU-----GUaGGGGGGCCu -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 133179 | 0.68 | 0.725492 |
Target: 5'- cGCCACg--GGCGu-CAUCCCCacgaucaacgccgCCGGAg -3' miRNA: 3'- -CGGUGauaCCGUcuGUAGGGG-------------GGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 81728 | 0.68 | 0.716696 |
Target: 5'- uGCCGCgcGUGcGCAGG--UCCCgCCGGAc -3' miRNA: 3'- -CGGUGa-UAC-CGUCUguAGGGgGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 153045 | 0.69 | 0.706855 |
Target: 5'- gGCgCGCgguUGGCcGGCGccgCCCCCUGGGg -3' miRNA: 3'- -CG-GUGau-ACCGuCUGUa--GGGGGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 91332 | 0.69 | 0.686999 |
Target: 5'- cGCCGCccgagccGCcGGCuUCCCCCCGGGg -3' miRNA: 3'- -CGGUGauac---CGuCUGuAGGGGGGCCU- -5' |
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5490 | 3' | -57.8 | NC_001798.1 | + | 61314 | 0.69 | 0.686999 |
Target: 5'- aGCCACUGUacacaggggcGGCGGGCuugggUgUCCCGGAc -3' miRNA: 3'- -CGGUGAUA----------CCGUCUGua---GgGGGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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