miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5490 3' -57.8 NC_001798.1 + 154478 0.67 0.808907
Target:  5'- gGCCGCUcccccGCGGGCGccgccccUCCCCCCGc- -3'
miRNA:   3'- -CGGUGAuac--CGUCUGU-------AGGGGGGCcu -5'
5490 3' -57.8 NC_001798.1 + 153045 0.69 0.706855
Target:  5'- gGCgCGCgguUGGCcGGCGccgCCCCCUGGGg -3'
miRNA:   3'- -CG-GUGau-ACCGuCUGUa--GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 152609 0.69 0.681005
Target:  5'- cGCCGCcccccgccgacGCAGAUgggaGUCCCCCCGGc -3'
miRNA:   3'- -CGGUGauac-------CGUCUG----UAGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 152240 0.73 0.479376
Target:  5'- gGCCGCUcggGGCcGGgGUCCgCCCGGGa -3'
miRNA:   3'- -CGGUGAua-CCGuCUgUAGGgGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 150487 0.84 0.101181
Target:  5'- cGCCccgacgACUGUGGCAGACcuccCCCCCCGGGg -3'
miRNA:   3'- -CGG------UGAUACCGUCUGua--GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 149555 0.66 0.816655
Target:  5'- uCCAUguccaggacgGGCAGGCAgUCCCCCGuGAc -3'
miRNA:   3'- cGGUGaua-------CCGUCUGUaGGGGGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 147171 0.66 0.843094
Target:  5'- aGCCGCccggcgccgGGCggaAGGCGUCCCccgCCCGGc -3'
miRNA:   3'- -CGGUGaua------CCG---UCUGUAGGG---GGGCCu -5'
5490 3' -57.8 NC_001798.1 + 139001 0.66 0.858663
Target:  5'- gGCCACcccGGC-GAUAUcgcCCUCCCGGGc -3'
miRNA:   3'- -CGGUGauaCCGuCUGUA---GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 135279 0.71 0.586362
Target:  5'- -gCGCUgGUGGCGGcCGcCCCCUCGGAg -3'
miRNA:   3'- cgGUGA-UACCGUCuGUaGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 133179 0.68 0.725492
Target:  5'- cGCCACg--GGCGu-CAUCCCCacgaucaacgccgCCGGAg -3'
miRNA:   3'- -CGGUGauaCCGUcuGUAGGGG-------------GGCCU- -5'
5490 3' -57.8 NC_001798.1 + 132143 0.75 0.343445
Target:  5'- cGCCGCcgggggccGGCGGGCGgggcgccCCCCCCGGAc -3'
miRNA:   3'- -CGGUGaua-----CCGUCUGUa------GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 130146 0.67 0.773951
Target:  5'- gGCCACUucGUcGUAGAUcggGUCCCCgUCGGAa -3'
miRNA:   3'- -CGGUGA--UAcCGUCUG---UAGGGG-GGCCU- -5'
5490 3' -57.8 NC_001798.1 + 129017 0.66 0.826778
Target:  5'- cGCCGCc--GGCgaaaaaAGGCGaugcUCCgCCCCGGAu -3'
miRNA:   3'- -CGGUGauaCCG------UCUGU----AGG-GGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 126260 0.68 0.744803
Target:  5'- aGCCGCcg-GGCguccGGACGcccaagcggccccUCCCCCCGaGAc -3'
miRNA:   3'- -CGGUGauaCCG----UCUGU-------------AGGGGGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 124037 0.68 0.745759
Target:  5'- cGCCAUUuaggAUGGCugcuauccaGGAUuaccgaCCCCCCGGGa -3'
miRNA:   3'- -CGGUGA----UACCG---------UCUGua----GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 123580 0.68 0.745759
Target:  5'- aGCCGCUGUGcCAGGUggCCCuUCCGGAc -3'
miRNA:   3'- -CGGUGAUACcGUCUGuaGGG-GGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 123373 0.68 0.745759
Target:  5'- gGgCACUcUGGCGuccccaggcGACGccaggCCCCCCGGGa -3'
miRNA:   3'- -CgGUGAuACCGU---------CUGUa----GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 123112 0.66 0.826778
Target:  5'- cGCCGCcucugcgGGCuAGugGUCUUUCCGGGa -3'
miRNA:   3'- -CGGUGaua----CCG-UCugUAGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 121810 0.67 0.792143
Target:  5'- gGCCGUUGUcGGCaccccAGACccccccAUCUCCCCGGAg -3'
miRNA:   3'- -CGGUGAUA-CCG-----UCUG------UAGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 116991 0.73 0.478444
Target:  5'- gGCC-CUGcgcgaccUGGCGcgcGACGUCCCCCUGGu -3'
miRNA:   3'- -CGGuGAU-------ACCGU---CUGUAGGGGGGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.