miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 16241 0.75 0.173476
Target:  5'- -uGGGGCCGgGGcccUCCCCGCCCACc -3'
miRNA:   3'- guCCCCGGUgCCaa-GGGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 17093 0.68 0.49149
Target:  5'- -cGGGuCCACGccggacgauuGUUCCCggCCGCCCGCGa -3'
miRNA:   3'- guCCCcGGUGC----------CAAGGG--GGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 22360 0.67 0.566232
Target:  5'- -cGGGGCCgcgcauaauGCGGUUCCaCCUgggggcggaACCC-CGg -3'
miRNA:   3'- guCCCCGG---------UGCCAAGG-GGG---------UGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 23577 0.67 0.566232
Target:  5'- cCGGGGGCgGCGccccggCCgagCCCGCCCAgGg -3'
miRNA:   3'- -GUCCCCGgUGCcaa---GG---GGGUGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 23797 0.69 0.438549
Target:  5'- gCGGGGaGCCGuggccCGGggccggcCCCCCGCCCcCGg -3'
miRNA:   3'- -GUCCC-CGGU-----GCCaa-----GGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 24460 0.67 0.566232
Target:  5'- -cGGcGCCGCGGgggugCUCgCCGCCCugGg -3'
miRNA:   3'- guCCcCGGUGCCaa---GGG-GGUGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 24717 0.7 0.39702
Target:  5'- -cGGGGcCCGCGGgcgcggcCgCCCCGCCgCACGc -3'
miRNA:   3'- guCCCC-GGUGCCaa-----G-GGGGUGG-GUGC- -5'
5492 3' -63.2 NC_001798.1 + 25085 0.68 0.473498
Target:  5'- cCAGGGcGCCgccggGCGGcgCCCCgCGCCCccCGa -3'
miRNA:   3'- -GUCCC-CGG-----UGCCaaGGGG-GUGGGu-GC- -5'
5492 3' -63.2 NC_001798.1 + 25165 0.79 0.098624
Target:  5'- gCGGGGGCCGCGc--CCCCCGCCC-CGc -3'
miRNA:   3'- -GUCCCCGGUGCcaaGGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 27030 0.73 0.240951
Target:  5'- gCGGGGGUCggGCGGgcggcacgucUCCCgCGCCCGCGg -3'
miRNA:   3'- -GUCCCCGG--UGCCa---------AGGGgGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 27252 0.66 0.614443
Target:  5'- gAGGcGGCCGCGGgaccgcagCCCCgugGCgCGCGg -3'
miRNA:   3'- gUCC-CCGGUGCCaa------GGGGg--UGgGUGC- -5'
5492 3' -63.2 NC_001798.1 + 27608 0.75 0.195393
Target:  5'- aGGGGGCgCGCGGggcugcccugCCgCCCGCCCGCc -3'
miRNA:   3'- gUCCCCG-GUGCCaa--------GG-GGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 28359 0.66 0.585431
Target:  5'- -cGGcGGCCcccCGcg-UCCCCGCCCGCGg -3'
miRNA:   3'- guCC-CCGGu--GCcaaGGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 28796 0.68 0.455842
Target:  5'- -cGGcGGCgCGCGGgUCCUCCGCCgcCGCGg -3'
miRNA:   3'- guCC-CCG-GUGCCaAGGGGGUGG--GUGC- -5'
5492 3' -63.2 NC_001798.1 + 29410 0.69 0.447149
Target:  5'- gCGGGGcGCCGgGGggaCUCCCAUCUGCGu -3'
miRNA:   3'- -GUCCC-CGGUgCCaa-GGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 29950 0.66 0.585431
Target:  5'- -cGGGGCCGac---CCCCgGCCCGCu -3'
miRNA:   3'- guCCCCGGUgccaaGGGGgUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 30181 0.67 0.547198
Target:  5'- aCGGGGGaCACGGcgCgggggUCCCGCCuCACGc -3'
miRNA:   3'- -GUCCCCgGUGCCaaG-----GGGGUGG-GUGC- -5'
5492 3' -63.2 NC_001798.1 + 30851 0.69 0.405123
Target:  5'- gGGGGGacaCACGGUccgcgCCCUguCGCCCACc -3'
miRNA:   3'- gUCCCCg--GUGCCAa----GGGG--GUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 31164 0.69 0.421636
Target:  5'- gCGGGGGCgaccCGCGGaaCCUCCcaGCCCGCc -3'
miRNA:   3'- -GUCCCCG----GUGCCaaGGGGG--UGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 31569 0.66 0.624146
Target:  5'- uCGGGGcgcGCCGCGcg-CCCCCGcgcggccgucgcCCCGCGc -3'
miRNA:   3'- -GUCCC---CGGUGCcaaGGGGGU------------GGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.