miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 5' -53.7 NC_001798.1 + 86424 0.66 0.961709
Target:  5'- cUCGaGGCGGaccccGAGGCGcAGCCCgGGg -3'
miRNA:   3'- aAGCaCCGCUa----CUUCGCuUUGGGgUC- -5'
5492 5' -53.7 NC_001798.1 + 2972 0.66 0.961709
Target:  5'- gUCGgcguGCGgcGggGCGGccggcccgcgGGCCCCGGg -3'
miRNA:   3'- aAGCac--CGCuaCuuCGCU----------UUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 21813 0.66 0.961709
Target:  5'- cUCGgGGCGGagcccgcgggaUGAcGCG-GGCCCCGGg -3'
miRNA:   3'- aAGCaCCGCU-----------ACUuCGCuUUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 102061 0.66 0.958033
Target:  5'- -gCGUGGgGGUGGuGGUaGGGCCCCAc -3'
miRNA:   3'- aaGCACCgCUACU-UCGcUUUGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 22952 0.66 0.954122
Target:  5'- -cCGUGcCGAcGAGGCG--GCCCCGGc -3'
miRNA:   3'- aaGCACcGCUaCUUCGCuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 83860 0.66 0.949971
Target:  5'- -gCGcUGGCGGgcccGAGGCGGcGACCCCc- -3'
miRNA:   3'- aaGC-ACCGCUa---CUUCGCU-UUGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 147226 0.66 0.945578
Target:  5'- -cCGgcgGaGCGcgGggGCcccGggGCCCCGGg -3'
miRNA:   3'- aaGCa--C-CGCuaCuuCG---CuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 36306 0.66 0.945578
Target:  5'- -gUGUGGCGgcGggGCGcGGGCCggggCCGGg -3'
miRNA:   3'- aaGCACCGCuaCuuCGC-UUUGG----GGUC- -5'
5492 5' -53.7 NC_001798.1 + 36100 0.66 0.945578
Target:  5'- -gCG-GGUGGUGggGgGggGCCCg-- -3'
miRNA:   3'- aaGCaCCGCUACuuCgCuuUGGGguc -5'
5492 5' -53.7 NC_001798.1 + 59108 0.66 0.945578
Target:  5'- -gCGUGGCGGccUGGAgccagagaugcGCGAAcCCCCGa -3'
miRNA:   3'- aaGCACCGCU--ACUU-----------CGCUUuGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 22353 0.66 0.945126
Target:  5'- gUCGgGGCGGggccgcgcauaaUGcgguuccaccuggGGGCGGAACCCCGGc -3'
miRNA:   3'- aAGCaCCGCU------------AC-------------UUCGCUUUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 34739 0.67 0.940939
Target:  5'- gUCG-GGCccgGGAGCGggGCggCCCGGg -3'
miRNA:   3'- aAGCaCCGcuaCUUCGCuuUG--GGGUC- -5'
5492 5' -53.7 NC_001798.1 + 97547 0.67 0.940462
Target:  5'- -gCGUGGCGcgGGgacgcccgcgAGCGAGgacggggagcgcgGCCCCGa -3'
miRNA:   3'- aaGCACCGCuaCU----------UCGCUU-------------UGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 57315 0.67 0.936052
Target:  5'- -cCGUGGCauaacgccaGAUcugGAGGCGGAACUCCGu -3'
miRNA:   3'- aaGCACCG---------CUA---CUUCGCUUUGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 55492 0.67 0.936052
Target:  5'- ----aGGCGA-GAAGCGGGACCgUCGGa -3'
miRNA:   3'- aagcaCCGCUaCUUCGCUUUGG-GGUC- -5'
5492 5' -53.7 NC_001798.1 + 17136 0.67 0.925527
Target:  5'- --aGUGcGCGGUGAGGCGcGAUUCCGc -3'
miRNA:   3'- aagCAC-CGCUACUUCGCuUUGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 127923 0.67 0.913999
Target:  5'- -aCGUGGgcaaccCGAc--GGCGggGCCCCGGg -3'
miRNA:   3'- aaGCACC------GCUacuUCGCuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 102393 0.67 0.913397
Target:  5'- gUCGgcGGCGAUGGcccccaccagcgcGGCGAucugGGCCuCCAGg -3'
miRNA:   3'- aAGCa-CCGCUACU-------------UCGCU----UUGG-GGUC- -5'
5492 5' -53.7 NC_001798.1 + 122355 0.68 0.901476
Target:  5'- aUUCgGUGGCG-UGggGCGGGcgacgcgcccGCCCCc- -3'
miRNA:   3'- -AAG-CACCGCuACuuCGCUU----------UGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 15032 0.68 0.901476
Target:  5'- aUUCcUGGCGGgagcgUGggGCGGAuggGCCCgGGg -3'
miRNA:   3'- -AAGcACCGCU-----ACuuCGCUU---UGGGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.