miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 132132 0.7 0.568007
Target:  5'- aGGCGGcCCugcGCCGCCGGGGg--CCGGc -3'
miRNA:   3'- cCCGCUuGG---UGGUGGCCCCaagGGUC- -5'
5494 3' -59.7 NC_001798.1 + 120393 0.7 0.577761
Target:  5'- cGGGCGAugU-CCGCgGGGGccgaUCCCGu -3'
miRNA:   3'- -CCCGCUugGuGGUGgCCCCa---AGGGUc -5'
5494 3' -59.7 NC_001798.1 + 31994 0.7 0.577761
Target:  5'- aGGGCGGcGCCG-CGCCGGGc--CCCGGa -3'
miRNA:   3'- -CCCGCU-UGGUgGUGGCCCcaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 85977 0.7 0.577761
Target:  5'- gGGGaguuCGAgGCCGCCGCCGGGGcgCUggcgCAGg -3'
miRNA:   3'- -CCC----GCU-UGGUGGUGGCCCCaaGG----GUC- -5'
5494 3' -59.7 NC_001798.1 + 27491 0.7 0.577761
Target:  5'- gGGGCGGGCgcgggaaaaaaGCCGCgCGGGGgcgCCCGc -3'
miRNA:   3'- -CCCGCUUGg----------UGGUG-GCCCCaa-GGGUc -5'
5494 3' -59.7 NC_001798.1 + 82009 0.69 0.58755
Target:  5'- gGGGCG-ACCGCCGCCGcGGccgcCgCCAGa -3'
miRNA:   3'- -CCCGCuUGGUGGUGGC-CCcaa-G-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 10697 0.69 0.58755
Target:  5'- cGGGCGcagggGACCGCaggcauCCaGGGGUUCCgCGGc -3'
miRNA:   3'- -CCCGC-----UUGGUGgu----GG-CCCCAAGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 34971 0.69 0.58755
Target:  5'- gGGGCGG-CCGCCGaggugCGGGGgcCCCu- -3'
miRNA:   3'- -CCCGCUuGGUGGUg----GCCCCaaGGGuc -5'
5494 3' -59.7 NC_001798.1 + 73223 0.69 0.59737
Target:  5'- cGGCGuuucggccuuCCGCCGgcCCGGGGgccCCCGGg -3'
miRNA:   3'- cCCGCuu--------GGUGGU--GGCCCCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 6365 0.69 0.59737
Target:  5'- gGGGaCGGGCCgggggGCCgggggGCCGGGGggCCgGGg -3'
miRNA:   3'- -CCC-GCUUGG-----UGG-----UGGCCCCaaGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 55011 0.69 0.607213
Target:  5'- cGGCgGGGCCGCCcuGCCGGGaGacgcCCCGGa -3'
miRNA:   3'- cCCG-CUUGGUGG--UGGCCC-Caa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 24171 0.69 0.607213
Target:  5'- cGGCGGGCCGCUucgGCUGGGG--CCUGGc -3'
miRNA:   3'- cCCGCUUGGUGG---UGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 84509 0.69 0.607213
Target:  5'- cGGGCGG-CCGCCGuaGGGcUUCCCc- -3'
miRNA:   3'- -CCCGCUuGGUGGUggCCCcAAGGGuc -5'
5494 3' -59.7 NC_001798.1 + 4033 0.69 0.617074
Target:  5'- cGGCcGGCCACCGCCGcGcGggCCCGGc -3'
miRNA:   3'- cCCGcUUGGUGGUGGC-CcCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 52092 0.69 0.617074
Target:  5'- gGGGCGcaugacguacAUCGCCACCGGGGcucugcucgCCCGc -3'
miRNA:   3'- -CCCGCu---------UGGUGGUGGCCCCaa-------GGGUc -5'
5494 3' -59.7 NC_001798.1 + 104326 0.69 0.626945
Target:  5'- -aGCGAugGCCuCCGCCGGGacggcUCCCGGg -3'
miRNA:   3'- ccCGCU--UGGuGGUGGCCCca---AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 41866 0.69 0.633857
Target:  5'- aGGGC--GCCGCgGCCGGGGaUcagcugcagcaggaCCCAGu -3'
miRNA:   3'- -CCCGcuUGGUGgUGGCCCCaA--------------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 29798 0.69 0.635833
Target:  5'- cGGGCGGACCccggccccgagcgGCCGCCGcGGcagaccCCCGGc -3'
miRNA:   3'- -CCCGCUUGG-------------UGGUGGC-CCcaa---GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 111562 0.69 0.63682
Target:  5'- cGGCGuagaacacCCACCACagcucccugagCGGGGggCCCGGc -3'
miRNA:   3'- cCCGCuu------GGUGGUG-----------GCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 39797 0.68 0.646691
Target:  5'- aGGCGcGACCACaCGCCGGuGGU-CgCGGg -3'
miRNA:   3'- cCCGC-UUGGUG-GUGGCC-CCAaGgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.