miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 3' -62.7 NC_001798.1 + 152551 0.66 0.655723
Target:  5'- --cGGGGCGgccCCGUCCC--CGGGGACc -3'
miRNA:   3'- gucCUCCGCa--GGCAGGGcgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 128973 0.66 0.655723
Target:  5'- gAGGAGGCGcUCGUCaCCcaagaCCGG-GACu -3'
miRNA:   3'- gUCCUCCGCaGGCAG-GGc----GGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 27555 0.66 0.646001
Target:  5'- gGGGAGGgG-CgGcgCCCGCgGGGGAg -3'
miRNA:   3'- gUCCUCCgCaGgCa-GGGCGgCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 43476 0.66 0.646001
Target:  5'- -cGGGGGCGggCGUgagggCCGCCGG-GGCa -3'
miRNA:   3'- guCCUCCGCagGCAg----GGCGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 91127 0.66 0.646001
Target:  5'- -cGGGGGCGUCCucGUCCaGCgaaCGcGGGGCg -3'
miRNA:   3'- guCCUCCGCAGG--CAGGgCG---GC-CUCUG- -5'
5495 3' -62.7 NC_001798.1 + 149399 0.66 0.646001
Target:  5'- gCGGGGGGCGUCgGgua-GUCGGGGGg -3'
miRNA:   3'- -GUCCUCCGCAGgCagggCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 154099 0.66 0.636269
Target:  5'- -cGGGGcGCGgCCGg--CGCCGGGGACc -3'
miRNA:   3'- guCCUC-CGCaGGCaggGCGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 13679 0.66 0.636269
Target:  5'- gCAGG-GcCG-CCGUCCCgacGCCGGAGGu -3'
miRNA:   3'- -GUCCuCcGCaGGCAGGG---CGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 87390 0.66 0.623614
Target:  5'- gGGGGGGCGUgCGaCCC-CCGGuuucuuuuuuacccGGACc -3'
miRNA:   3'- gUCCUCCGCAgGCaGGGcGGCC--------------UCUG- -5'
5495 3' -62.7 NC_001798.1 + 54369 0.66 0.616803
Target:  5'- ----cGGCGUCCGgCCCaCCGGGGGg -3'
miRNA:   3'- guccuCCGCAGGCaGGGcGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 49982 0.66 0.607082
Target:  5'- -cGGAGGgcgaGUCCGUCauGCgGGAGcACg -3'
miRNA:   3'- guCCUCCg---CAGGCAGggCGgCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 85287 0.66 0.601257
Target:  5'- gGGGGGGCGggggCCGggguccgcccgcggCCCGCCcGcAGACc -3'
miRNA:   3'- gUCCUCCGCa---GGCa-------------GGGCGGcC-UCUG- -5'
5495 3' -62.7 NC_001798.1 + 58117 0.66 0.597378
Target:  5'- cCAGGGcccGGCGUCUggGUCCuugugaaggcggCGCCGGAGcCc -3'
miRNA:   3'- -GUCCU---CCGCAGG--CAGG------------GCGGCCUCuG- -5'
5495 3' -62.7 NC_001798.1 + 22776 0.66 0.597378
Target:  5'- -cGGGGGaCGucUCCGggCCgCGgCGGAGACg -3'
miRNA:   3'- guCCUCC-GC--AGGCa-GG-GCgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 59665 0.66 0.597378
Target:  5'- gGGGGGGCGaCuCGgCUCGCgUGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaG-GCaGGGCG-GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 18606 0.67 0.578047
Target:  5'- cCGGGuccGCGcgCCGUCCCGCCGuGcauagguccgcAGACa -3'
miRNA:   3'- -GUCCuc-CGCa-GGCAGGGCGGC-C-----------UCUG- -5'
5495 3' -62.7 NC_001798.1 + 39561 0.67 0.577083
Target:  5'- -cGGGGcCGUCCGUCCgCGCCgacgcggGGuGGCg -3'
miRNA:   3'- guCCUCcGCAGGCAGG-GCGG-------CCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 149935 0.67 0.56843
Target:  5'- gAGGAGGCGgcggcgaCCGcggCCUGggacgaCGGAGACg -3'
miRNA:   3'- gUCCUCCGCa------GGCa--GGGCg-----GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 36486 0.67 0.55981
Target:  5'- gAGGGGGCG-CCGgcgcgacgcgggcggCCgGgCGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaGGCa--------------GGgCgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 31872 0.67 0.558854
Target:  5'- gAGGGGGCGgcggcCCG-CCC-CCGGAagaGGCg -3'
miRNA:   3'- gUCCUCCGCa----GGCaGGGcGGCCU---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.