miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 3' -62.7 NC_001798.1 + 1510 0.69 0.475307
Target:  5'- gAGGcGGCGgcccggCCGUCCagCGCCGGGaGCa -3'
miRNA:   3'- gUCCuCCGCa-----GGCAGG--GCGGCCUcUG- -5'
5495 3' -62.7 NC_001798.1 + 2541 0.69 0.440192
Target:  5'- gCGGGGGGCG-CgGccCCCGCgGGAGGg -3'
miRNA:   3'- -GUCCUCCGCaGgCa-GGGCGgCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 2579 0.7 0.398458
Target:  5'- gCGGGGGGCGUCCG-CgCgGCUcuucuucgGGGGGCg -3'
miRNA:   3'- -GUCCUCCGCAGGCaG-GgCGG--------CCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 2980 0.68 0.493381
Target:  5'- gCGGcGGGGCGgCCGgCCCGCgggccccgggcgCGGGGGCg -3'
miRNA:   3'- -GUC-CUCCGCaGGCaGGGCG------------GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 5954 0.71 0.366952
Target:  5'- aAGGGccGGCGUCCcgGUCgCCGCCgcaccaGGGGACa -3'
miRNA:   3'- gUCCU--CCGCAGG--CAG-GGCGG------CCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 9150 0.68 0.484303
Target:  5'- gCGGGcgcGGCG-CCGcCCgCGCCGGGGGg -3'
miRNA:   3'- -GUCCu--CCGCaGGCaGG-GCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 10174 0.68 0.530422
Target:  5'- -uGGAGaCGUUCGUCCCaaacgucuccCCGGGGGCa -3'
miRNA:   3'- guCCUCcGCAGGCAGGGc---------GGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 11634 0.68 0.52106
Target:  5'- gCGGGcgcGGGCGUCCcugugUCC-CCGGGGGCg -3'
miRNA:   3'- -GUCC---UCCGCAGGca---GGGcGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 13679 0.66 0.636269
Target:  5'- gCAGG-GcCG-CCGUCCCgacGCCGGAGGu -3'
miRNA:   3'- -GUCCuCcGCaGGCAGGG---CGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 15917 0.68 0.493381
Target:  5'- aAGGGGGCGUacggaCCGUCaucuagggCC-CCGGGGGCc -3'
miRNA:   3'- gUCCUCCGCA-----GGCAG--------GGcGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 18606 0.67 0.578047
Target:  5'- cCGGGuccGCGcgCCGUCCCGCCGuGcauagguccgcAGACa -3'
miRNA:   3'- -GUCCuc-CGCa-GGCAGGGCGGC-C-----------UCUG- -5'
5495 3' -62.7 NC_001798.1 + 22776 0.66 0.597378
Target:  5'- -cGGGGGaCGucUCCGggCCgCGgCGGAGACg -3'
miRNA:   3'- guCCUCC-GC--AGGCa-GG-GCgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 22980 0.67 0.549324
Target:  5'- gGGGAGGcCGUCgaCGagCCUGCCGcGGACg -3'
miRNA:   3'- gUCCUCC-GCAG--GCa-GGGCGGCcUCUG- -5'
5495 3' -62.7 NC_001798.1 + 23550 0.68 0.530422
Target:  5'- gAGGAGGCGgggGUgCCCGCgagggcccCGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaggCA-GGGCG--------GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 27555 0.66 0.646001
Target:  5'- gGGGAGGgG-CgGcgCCCGCgGGGGAg -3'
miRNA:   3'- gUCCUCCgCaGgCa-GGGCGgCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 28954 0.67 0.543631
Target:  5'- gAGGGcccGGCG-CCGcCCCGCCgcuccgcccgccccaGGGGGCg -3'
miRNA:   3'- gUCCU---CCGCaGGCaGGGCGG---------------CCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 29514 0.7 0.423197
Target:  5'- gAGGGGGgGauucccucccUCCGccCCCGCCGGGGcGCg -3'
miRNA:   3'- gUCCUCCgC----------AGGCa-GGGCGGCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 31872 0.67 0.558854
Target:  5'- gAGGGGGCGgcggcCCG-CCC-CCGGAagaGGCg -3'
miRNA:   3'- gUCCUCCGCa----GGCaGGGcGGCCU---CUG- -5'
5495 3' -62.7 NC_001798.1 + 32251 0.68 0.502535
Target:  5'- uGGGAGcgucGCGUCCGcgUCCggCGCUGGGGAg -3'
miRNA:   3'- gUCCUC----CGCAGGC--AGG--GCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 32782 0.68 0.530422
Target:  5'- gCAGGGcGCGcCCGcgCCgGCCGGcGACg -3'
miRNA:   3'- -GUCCUcCGCaGGCa-GGgCGGCCuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.