miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 3' -62.7 NC_001798.1 + 154099 0.66 0.636269
Target:  5'- -cGGGGcGCGgCCGg--CGCCGGGGACc -3'
miRNA:   3'- guCCUC-CGCaGGCaggGCGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 153648 0.73 0.261084
Target:  5'- gGGGAGGCGUaCCuUCCCGCgCGGcgcguccgcgggcggGGACg -3'
miRNA:   3'- gUCCUCCGCA-GGcAGGGCG-GCC---------------UCUG- -5'
5495 3' -62.7 NC_001798.1 + 153018 0.67 0.539845
Target:  5'- cCGGGGcGGaGUCCGggCCCGCgCGGcGGCg -3'
miRNA:   3'- -GUCCU-CCgCAGGCa-GGGCG-GCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 152551 0.66 0.655723
Target:  5'- --cGGGGCGgccCCGUCCC--CGGGGACc -3'
miRNA:   3'- gucCUCCGCa--GGCAGGGcgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 150652 0.68 0.484303
Target:  5'- gCGGGGGGCGUCCugcccUCCGCCGccgcGGCg -3'
miRNA:   3'- -GUCCUCCGCAGGca---GGGCGGCcu--CUG- -5'
5495 3' -62.7 NC_001798.1 + 150556 0.7 0.390421
Target:  5'- aAGGAGaGCGgcCCGgggCCCGCggggcggcgCGGAGACg -3'
miRNA:   3'- gUCCUC-CGCa-GGCa--GGGCG---------GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 150212 0.74 0.247197
Target:  5'- -cGGGGGUGUUgGUgCCGCgGGGGACc -3'
miRNA:   3'- guCCUCCGCAGgCAgGGCGgCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 149935 0.67 0.56843
Target:  5'- gAGGAGGCGgcggcgaCCGcggCCUGggacgaCGGAGACg -3'
miRNA:   3'- gUCCUCCGCa------GGCa--GGGCg-----GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 149399 0.66 0.646001
Target:  5'- gCGGGGGGCGUCgGgua-GUCGGGGGg -3'
miRNA:   3'- -GUCCUCCGCAGgCagggCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 149247 0.68 0.511763
Target:  5'- -cGGGGGCGUCg--CCgGCCGGcgcGGGCg -3'
miRNA:   3'- guCCUCCGCAGgcaGGgCGGCC---UCUG- -5'
5495 3' -62.7 NC_001798.1 + 137681 0.69 0.448834
Target:  5'- aAGGAGGCGaUCGcCCCGCUaGAGuACg -3'
miRNA:   3'- gUCCUCCGCaGGCaGGGCGGcCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 135861 0.68 0.511763
Target:  5'- uCGGGAGGCGUCUGga-CGC-GGAGuACu -3'
miRNA:   3'- -GUCCUCCGCAGGCaggGCGgCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 135770 0.68 0.511763
Target:  5'- -cGGcGGcCGgccgCCGgCCCGCCGGAGGa -3'
miRNA:   3'- guCCuCC-GCa---GGCaGGGCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 129312 0.72 0.295948
Target:  5'- gAGGAgGGCGUgaCGUUCCGCCuGGAGgACg -3'
miRNA:   3'- gUCCU-CCGCAg-GCAGGGCGG-CCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 128973 0.66 0.655723
Target:  5'- gAGGAGGCGcUCGUCaCCcaagaCCGG-GACu -3'
miRNA:   3'- gUCCUCCGCaGGCAG-GGc----GGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 122112 0.67 0.539845
Target:  5'- gCGGGGGGCGcUuuG-CCaGCCGGGGGg -3'
miRNA:   3'- -GUCCUCCGC-AggCaGGgCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 110325 0.68 0.511763
Target:  5'- gGGGAGGUcauGUCgGUgCUGCUGGuGGACa -3'
miRNA:   3'- gUCCUCCG---CAGgCAgGGCGGCC-UCUG- -5'
5495 3' -62.7 NC_001798.1 + 106742 0.74 0.225418
Target:  5'- cCAGGGGGCcUCCGgagCCCGC-GGGGAUc -3'
miRNA:   3'- -GUCCUCCGcAGGCa--GGGCGgCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 101843 0.75 0.191229
Target:  5'- gGGGAGGCGUggGUCCCGgCGGcGGCg -3'
miRNA:   3'- gUCCUCCGCAggCAGGGCgGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 97041 0.74 0.225418
Target:  5'- gAGGAGGCcgaCGcCCUGCUGGAGGCg -3'
miRNA:   3'- gUCCUCCGcagGCaGGGCGGCCUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.