miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 3' -62.7 NC_001798.1 + 101843 0.75 0.191229
Target:  5'- gGGGAGGCGUggGUCCCGgCGGcGGCg -3'
miRNA:   3'- gUCCUCCGCAggCAGGGCgGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 106742 0.74 0.225418
Target:  5'- cCAGGGGGCcUCCGgagCCCGC-GGGGAUc -3'
miRNA:   3'- -GUCCUCCGcAGGCa--GGGCGgCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 97041 0.74 0.225418
Target:  5'- gAGGAGGCcgaCGcCCUGCUGGAGGCg -3'
miRNA:   3'- gUCCUCCGcagGCaGGGCGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 150212 0.74 0.247197
Target:  5'- -cGGGGGUGUUgGUgCCGCgGGGGACc -3'
miRNA:   3'- guCCUCCGCAGgCAgGGCGgCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 57541 0.74 0.247197
Target:  5'- uCGGGGGGCGgaugCGUUCCGC-GGGGACg -3'
miRNA:   3'- -GUCCUCCGCag--GCAGGGCGgCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 153648 0.73 0.261084
Target:  5'- gGGGAGGCGUaCCuUCCCGCgCGGcgcguccgcgggcggGGACg -3'
miRNA:   3'- gUCCUCCGCA-GGcAGGGCG-GCC---------------UCUG- -5'
5495 3' -62.7 NC_001798.1 + 129312 0.72 0.295948
Target:  5'- gAGGAgGGCGUgaCGUUCCGCCuGGAGgACg -3'
miRNA:   3'- gUCCU-CCGCAg-GCAGGGCGG-CCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 60880 0.72 0.316068
Target:  5'- aGGGGGGCGgcggCCG-CaCCGCCGGgaAGAUg -3'
miRNA:   3'- gUCCUCCGCa---GGCaG-GGCGGCC--UCUG- -5'
5495 3' -62.7 NC_001798.1 + 5954 0.71 0.366952
Target:  5'- aAGGGccGGCGUCCcgGUCgCCGCCgcaccaGGGGACa -3'
miRNA:   3'- gUCCU--CCGCAGG--CAG-GGCGG------CCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 34968 0.7 0.385649
Target:  5'- gAGGGGGCGgccgCCGaggugcgggggccccUCCgGCCGGGGcGCa -3'
miRNA:   3'- gUCCUCCGCa---GGC---------------AGGgCGGCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 37304 0.7 0.390421
Target:  5'- uGGGAGGCGaCC-UCCCGUCGGGc-- -3'
miRNA:   3'- gUCCUCCGCaGGcAGGGCGGCCUcug -5'
5495 3' -62.7 NC_001798.1 + 150556 0.7 0.390421
Target:  5'- aAGGAGaGCGgcCCGgggCCCGCggggcggcgCGGAGACg -3'
miRNA:   3'- gUCCUC-CGCa-GGCa--GGGCG---------GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 2579 0.7 0.398458
Target:  5'- gCGGGGGGCGUCCG-CgCgGCUcuucuucgGGGGGCg -3'
miRNA:   3'- -GUCCUCCGCAGGCaG-GgCGG--------CCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 45474 0.7 0.423197
Target:  5'- gAGGuuGCGUCgGUCCCagucacccacGCCGGcGACa -3'
miRNA:   3'- gUCCucCGCAGgCAGGG----------CGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 29514 0.7 0.423197
Target:  5'- gAGGGGGgGauucccucccUCCGccCCCGCCGGGGcGCg -3'
miRNA:   3'- gUCCUCCgC----------AGGCa-GGGCGGCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 88057 0.7 0.423197
Target:  5'- gGGGGGGCGggcUCGUCCC-CUGG-GGCg -3'
miRNA:   3'- gUCCUCCGCa--GGCAGGGcGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 41440 0.7 0.423197
Target:  5'- gCGGGcgugGGGgGUCCauGcCCCGCCGGGGGg -3'
miRNA:   3'- -GUCC----UCCgCAGG--CaGGGCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 36038 0.69 0.431646
Target:  5'- uGGGGGGUggcggcggugGUCggCGUgCUGCCGGAGGCu -3'
miRNA:   3'- gUCCUCCG----------CAG--GCAgGGCGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 2541 0.69 0.440192
Target:  5'- gCGGGGGGCG-CgGccCCCGCgGGAGGg -3'
miRNA:   3'- -GUCCUCCGCaGgCa-GGGCGgCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 137681 0.69 0.448834
Target:  5'- aAGGAGGCGaUCGcCCCGCUaGAGuACg -3'
miRNA:   3'- gUCCUCCGCaGGCaGGGCGGcCUC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.