miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 3' -62.7 NC_001798.1 + 1510 0.69 0.475307
Target:  5'- gAGGcGGCGgcccggCCGUCCagCGCCGGGaGCa -3'
miRNA:   3'- gUCCuCCGCa-----GGCAGG--GCGGCCUcUG- -5'
5495 3' -62.7 NC_001798.1 + 51240 0.68 0.484303
Target:  5'- cCAGGAGccaGUCCGUUCgcggaCGCCGG-GACa -3'
miRNA:   3'- -GUCCUCcg-CAGGCAGG-----GCGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 150652 0.68 0.484303
Target:  5'- gCGGGGGGCGUCCugcccUCCGCCGccgcGGCg -3'
miRNA:   3'- -GUCCUCCGCAGGca---GGGCGGCcu--CUG- -5'
5495 3' -62.7 NC_001798.1 + 9150 0.68 0.484303
Target:  5'- gCGGGcgcGGCG-CCGcCCgCGCCGGGGGg -3'
miRNA:   3'- -GUCCu--CCGCaGGCaGG-GCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 36111 0.68 0.485208
Target:  5'- gGGGGGGCccggcugcgucucgCCGcgaUCCCGCCGGugGGGCg -3'
miRNA:   3'- gUCCUCCGca------------GGC---AGGGCGGCC--UCUG- -5'
5495 3' -62.7 NC_001798.1 + 2980 0.68 0.493381
Target:  5'- gCGGcGGGGCGgCCGgCCCGCgggccccgggcgCGGGGGCg -3'
miRNA:   3'- -GUC-CUCCGCaGGCaGGGCG------------GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 15917 0.68 0.493381
Target:  5'- aAGGGGGCGUacggaCCGUCaucuagggCC-CCGGGGGCc -3'
miRNA:   3'- gUCCUCCGCA-----GGCAG--------GGcGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 81430 0.68 0.493381
Target:  5'- gAGGAgcuGGCGUCCGaCgaCGCCGGcGGCc -3'
miRNA:   3'- gUCCU---CCGCAGGCaGg-GCGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 32251 0.68 0.502535
Target:  5'- uGGGAGcgucGCGUCCGcgUCCggCGCUGGGGAg -3'
miRNA:   3'- gUCCUC----CGCAGGC--AGG--GCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 135770 0.68 0.511763
Target:  5'- -cGGcGGcCGgccgCCGgCCCGCCGGAGGa -3'
miRNA:   3'- guCCuCC-GCa---GGCaGGGCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 110325 0.68 0.511763
Target:  5'- gGGGAGGUcauGUCgGUgCUGCUGGuGGACa -3'
miRNA:   3'- gUCCUCCG---CAGgCAgGGCGGCC-UCUG- -5'
5495 3' -62.7 NC_001798.1 + 135861 0.68 0.511763
Target:  5'- uCGGGAGGCGUCUGga-CGC-GGAGuACu -3'
miRNA:   3'- -GUCCUCCGCAGGCaggGCGgCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 149247 0.68 0.511763
Target:  5'- -cGGGGGCGUCg--CCgGCCGGcgcGGGCg -3'
miRNA:   3'- guCCUCCGCAGgcaGGgCGGCC---UCUG- -5'
5495 3' -62.7 NC_001798.1 + 68523 0.68 0.518264
Target:  5'- gAGGGGGCGUCaUGUCCucggccccgugaauCGuguugguuauCCGGAGGCg -3'
miRNA:   3'- gUCCUCCGCAG-GCAGG--------------GC----------GGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 86352 0.68 0.52106
Target:  5'- ---aGGGCGUCCGUCguCCGCuacuCGGAGAa -3'
miRNA:   3'- guccUCCGCAGGCAG--GGCG----GCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 55011 0.68 0.52106
Target:  5'- ----cGGCGgggCCGcCCUGCCGgGAGACg -3'
miRNA:   3'- guccuCCGCa--GGCaGGGCGGC-CUCUG- -5'
5495 3' -62.7 NC_001798.1 + 43518 0.68 0.52106
Target:  5'- gCAGGuAGGCGgcggCCGcgucUCCCGCCaG-GGCg -3'
miRNA:   3'- -GUCC-UCCGCa---GGC----AGGGCGGcCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 11634 0.68 0.52106
Target:  5'- gCGGGcgcGGGCGUCCcugugUCC-CCGGGGGCg -3'
miRNA:   3'- -GUCC---UCCGCAGGca---GGGcGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 35815 0.68 0.529483
Target:  5'- gGGGGGGCGUCgGgaCUCgcggaggGCCGGAGAa -3'
miRNA:   3'- gUCCUCCGCAGgCa-GGG-------CGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 23550 0.68 0.530422
Target:  5'- gAGGAGGCGgggGUgCCCGCgagggcccCGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaggCA-GGGCG--------GCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.