miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 3' -62.7 NC_001798.1 + 76604 0.67 0.549324
Target:  5'- -cGGGGGCGggCUGUCCC-CC-GAGGCc -3'
miRNA:   3'- guCCUCCGCa-GGCAGGGcGGcCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 31872 0.67 0.558854
Target:  5'- gAGGGGGCGgcggcCCG-CCC-CCGGAagaGGCg -3'
miRNA:   3'- gUCCUCCGCa----GGCaGGGcGGCCU---CUG- -5'
5495 3' -62.7 NC_001798.1 + 36486 0.67 0.55981
Target:  5'- gAGGGGGCG-CCGgcgcgacgcgggcggCCgGgCGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaGGCa--------------GGgCgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 149935 0.67 0.56843
Target:  5'- gAGGAGGCGgcggcgaCCGcggCCUGggacgaCGGAGACg -3'
miRNA:   3'- gUCCUCCGCa------GGCa--GGGCg-----GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 39561 0.67 0.577083
Target:  5'- -cGGGGcCGUCCGUCCgCGCCgacgcggGGuGGCg -3'
miRNA:   3'- guCCUCcGCAGGCAGG-GCGG-------CCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 18606 0.67 0.578047
Target:  5'- cCGGGuccGCGcgCCGUCCCGCCGuGcauagguccgcAGACa -3'
miRNA:   3'- -GUCCuc-CGCa-GGCAGGGCGGC-C-----------UCUG- -5'
5495 3' -62.7 NC_001798.1 + 43518 0.68 0.52106
Target:  5'- gCAGGuAGGCGgcggCCGcgucUCCCGCCaG-GGCg -3'
miRNA:   3'- -GUCC-UCCGCa---GGC----AGGGCGGcCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 11634 0.68 0.52106
Target:  5'- gCGGGcgcGGGCGUCCcugugUCC-CCGGGGGCg -3'
miRNA:   3'- -GUCC---UCCGCAGGca---GGGcGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 68523 0.68 0.518264
Target:  5'- gAGGGGGCGUCaUGUCCucggccccgugaauCGuguugguuauCCGGAGGCg -3'
miRNA:   3'- gUCCUCCGCAG-GCAGG--------------GC----------GGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 149247 0.68 0.511763
Target:  5'- -cGGGGGCGUCg--CCgGCCGGcgcGGGCg -3'
miRNA:   3'- guCCUCCGCAGgcaGGgCGGCC---UCUG- -5'
5495 3' -62.7 NC_001798.1 + 135770 0.68 0.511763
Target:  5'- -cGGcGGcCGgccgCCGgCCCGCCGGAGGa -3'
miRNA:   3'- guCCuCC-GCa---GGCaGGGCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 135861 0.68 0.511763
Target:  5'- uCGGGAGGCGUCUGga-CGC-GGAGuACu -3'
miRNA:   3'- -GUCCUCCGCAGGCaggGCGgCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 55011 0.68 0.52106
Target:  5'- ----cGGCGgggCCGcCCUGCCGgGAGACg -3'
miRNA:   3'- guccuCCGCa--GGCaGGGCGGC-CUCUG- -5'
5495 3' -62.7 NC_001798.1 + 86352 0.68 0.52106
Target:  5'- ---aGGGCGUCCGUCguCCGCuacuCGGAGAa -3'
miRNA:   3'- guccUCCGCAGGCAG--GGCG----GCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 35815 0.68 0.529483
Target:  5'- gGGGGGGCGUCgGgaCUCgcggaggGCCGGAGAa -3'
miRNA:   3'- gUCCUCCGCAGgCa-GGG-------CGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 10174 0.68 0.530422
Target:  5'- -uGGAGaCGUUCGUCCCaaacgucuccCCGGGGGCa -3'
miRNA:   3'- guCCUCcGCAGGCAGGGc---------GGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 23550 0.68 0.530422
Target:  5'- gAGGAGGCGgggGUgCCCGCgagggcccCGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaggCA-GGGCG--------GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 32782 0.68 0.530422
Target:  5'- gCAGGGcGCGcCCGcgCCgGCCGGcGACg -3'
miRNA:   3'- -GUCCUcCGCaGGCa-GGgCGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 70309 0.68 0.530422
Target:  5'- uCGGGcgcGGCGgUCGgCCCGgCGGAGGCg -3'
miRNA:   3'- -GUCCu--CCGCaGGCaGGGCgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 110325 0.68 0.511763
Target:  5'- gGGGAGGUcauGUCgGUgCUGCUGGuGGACa -3'
miRNA:   3'- gUCCUCCG---CAGgCAgGGCGGCC-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.