miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 3' -62.7 NC_001798.1 + 34968 0.7 0.385649
Target:  5'- gAGGGGGCGgccgCCGaggugcgggggccccUCCgGCCGGGGcGCa -3'
miRNA:   3'- gUCCUCCGCa---GGC---------------AGGgCGGCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 35815 0.68 0.529483
Target:  5'- gGGGGGGCGUCgGgaCUCgcggaggGCCGGAGAa -3'
miRNA:   3'- gUCCUCCGCAGgCa-GGG-------CGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 36038 0.69 0.431646
Target:  5'- uGGGGGGUggcggcggugGUCggCGUgCUGCCGGAGGCu -3'
miRNA:   3'- gUCCUCCG----------CAG--GCAgGGCGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 36111 0.68 0.485208
Target:  5'- gGGGGGGCccggcugcgucucgCCGcgaUCCCGCCGGugGGGCg -3'
miRNA:   3'- gUCCUCCGca------------GGC---AGGGCGGCC--UCUG- -5'
5495 3' -62.7 NC_001798.1 + 36486 0.67 0.55981
Target:  5'- gAGGGGGCG-CCGgcgcgacgcgggcggCCgGgCGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaGGCa--------------GGgCgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 37304 0.7 0.390421
Target:  5'- uGGGAGGCGaCC-UCCCGUCGGGc-- -3'
miRNA:   3'- gUCCUCCGCaGGcAGGGCGGCCUcug -5'
5495 3' -62.7 NC_001798.1 + 39561 0.67 0.577083
Target:  5'- -cGGGGcCGUCCGUCCgCGCCgacgcggGGuGGCg -3'
miRNA:   3'- guCCUCcGCAGGCAGG-GCGG-------CCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 41440 0.7 0.423197
Target:  5'- gCGGGcgugGGGgGUCCauGcCCCGCCGGGGGg -3'
miRNA:   3'- -GUCC----UCCgCAGG--CaGGGCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 43476 0.66 0.646001
Target:  5'- -cGGGGGCGggCGUgagggCCGCCGG-GGCa -3'
miRNA:   3'- guCCUCCGCagGCAg----GGCGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 43518 0.68 0.52106
Target:  5'- gCAGGuAGGCGgcggCCGcgucUCCCGCCaG-GGCg -3'
miRNA:   3'- -GUCC-UCCGCa---GGC----AGGGCGGcCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 45474 0.7 0.423197
Target:  5'- gAGGuuGCGUCgGUCCCagucacccacGCCGGcGACa -3'
miRNA:   3'- gUCCucCGCAGgCAGGG----------CGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 49982 0.66 0.607082
Target:  5'- -cGGAGGgcgaGUCCGUCauGCgGGAGcACg -3'
miRNA:   3'- guCCUCCg---CAGGCAGggCGgCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 51240 0.68 0.484303
Target:  5'- cCAGGAGccaGUCCGUUCgcggaCGCCGG-GACa -3'
miRNA:   3'- -GUCCUCcg-CAGGCAGG-----GCGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 54369 0.66 0.616803
Target:  5'- ----cGGCGUCCGgCCCaCCGGGGGg -3'
miRNA:   3'- guccuCCGCAGGCaGGGcGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 55011 0.68 0.52106
Target:  5'- ----cGGCGgggCCGcCCUGCCGgGAGACg -3'
miRNA:   3'- guccuCCGCa--GGCaGGGCGGC-CUCUG- -5'
5495 3' -62.7 NC_001798.1 + 57541 0.74 0.247197
Target:  5'- uCGGGGGGCGgaugCGUUCCGC-GGGGACg -3'
miRNA:   3'- -GUCCUCCGCag--GCAGGGCGgCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 58117 0.66 0.597378
Target:  5'- cCAGGGcccGGCGUCUggGUCCuugugaaggcggCGCCGGAGcCc -3'
miRNA:   3'- -GUCCU---CCGCAGG--CAGG------------GCGGCCUCuG- -5'
5495 3' -62.7 NC_001798.1 + 59665 0.66 0.597378
Target:  5'- gGGGGGGCGaCuCGgCUCGCgUGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaG-GCaGGGCG-GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 60880 0.72 0.316068
Target:  5'- aGGGGGGCGgcggCCG-CaCCGCCGGgaAGAUg -3'
miRNA:   3'- gUCCUCCGCa---GGCaG-GGCGGCC--UCUG- -5'
5495 3' -62.7 NC_001798.1 + 68523 0.68 0.518264
Target:  5'- gAGGGGGCGUCaUGUCCucggccccgugaauCGuguugguuauCCGGAGGCg -3'
miRNA:   3'- gUCCUCCGCAG-GCAGG--------------GC----------GGCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.