miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 3' -62.7 NC_001798.1 + 70309 0.68 0.530422
Target:  5'- uCGGGcgcGGCGgUCGgCCCGgCGGAGGCg -3'
miRNA:   3'- -GUCCu--CCGCaGGCaGGGCgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 76063 0.68 0.530422
Target:  5'- -uGGAGGaCGUgCGgauccaggCCCGCCGGGcGAUc -3'
miRNA:   3'- guCCUCC-GCAgGCa-------GGGCGGCCU-CUG- -5'
5495 3' -62.7 NC_001798.1 + 32782 0.68 0.530422
Target:  5'- gCAGGGcGCGcCCGcgCCgGCCGGcGACg -3'
miRNA:   3'- -GUCCUcCGCaGGCa-GGgCGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 23550 0.68 0.530422
Target:  5'- gAGGAGGCGgggGUgCCCGCgagggcccCGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaggCA-GGGCG--------GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 153018 0.67 0.539845
Target:  5'- cCGGGGcGGaGUCCGggCCCGCgCGGcGGCg -3'
miRNA:   3'- -GUCCU-CCgCAGGCa-GGGCG-GCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 71096 0.67 0.539845
Target:  5'- gCGGucGGCGUgCGcgCCC-CCGGGGACg -3'
miRNA:   3'- -GUCcuCCGCAgGCa-GGGcGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 122112 0.67 0.539845
Target:  5'- gCGGGGGGCGcUuuG-CCaGCCGGGGGg -3'
miRNA:   3'- -GUCCUCCGC-AggCaGGgCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 28954 0.67 0.543631
Target:  5'- gAGGGcccGGCG-CCGcCCCGCCgcuccgcccgccccaGGGGGCg -3'
miRNA:   3'- gUCCU---CCGCaGGCaGGGCGG---------------CCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 76604 0.67 0.549324
Target:  5'- -cGGGGGCGggCUGUCCC-CC-GAGGCc -3'
miRNA:   3'- guCCUCCGCa-GGCAGGGcGGcCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 22980 0.67 0.549324
Target:  5'- gGGGAGGcCGUCgaCGagCCUGCCGcGGACg -3'
miRNA:   3'- gUCCUCC-GCAG--GCa-GGGCGGCcUCUG- -5'
5495 3' -62.7 NC_001798.1 + 31872 0.67 0.558854
Target:  5'- gAGGGGGCGgcggcCCG-CCC-CCGGAagaGGCg -3'
miRNA:   3'- gUCCUCCGCa----GGCaGGGcGGCCU---CUG- -5'
5495 3' -62.7 NC_001798.1 + 36486 0.67 0.55981
Target:  5'- gAGGGGGCG-CCGgcgcgacgcgggcggCCgGgCGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaGGCa--------------GGgCgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 149935 0.67 0.56843
Target:  5'- gAGGAGGCGgcggcgaCCGcggCCUGggacgaCGGAGACg -3'
miRNA:   3'- gUCCUCCGCa------GGCa--GGGCg-----GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 39561 0.67 0.577083
Target:  5'- -cGGGGcCGUCCGUCCgCGCCgacgcggGGuGGCg -3'
miRNA:   3'- guCCUCcGCAGGCAGG-GCGG-------CCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 18606 0.67 0.578047
Target:  5'- cCGGGuccGCGcgCCGUCCCGCCGuGcauagguccgcAGACa -3'
miRNA:   3'- -GUCCuc-CGCa-GGCAGGGCGGC-C-----------UCUG- -5'
5495 3' -62.7 NC_001798.1 + 59665 0.66 0.597378
Target:  5'- gGGGGGGCGaCuCGgCUCGCgUGGGGGCg -3'
miRNA:   3'- gUCCUCCGCaG-GCaGGGCG-GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 58117 0.66 0.597378
Target:  5'- cCAGGGcccGGCGUCUggGUCCuugugaaggcggCGCCGGAGcCc -3'
miRNA:   3'- -GUCCU---CCGCAGG--CAGG------------GCGGCCUCuG- -5'
5495 3' -62.7 NC_001798.1 + 22776 0.66 0.597378
Target:  5'- -cGGGGGaCGucUCCGggCCgCGgCGGAGACg -3'
miRNA:   3'- guCCUCC-GC--AGGCa-GG-GCgGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 85287 0.66 0.601257
Target:  5'- gGGGGGGCGggggCCGggguccgcccgcggCCCGCCcGcAGACc -3'
miRNA:   3'- gUCCUCCGCa---GGCa-------------GGGCGGcC-UCUG- -5'
5495 3' -62.7 NC_001798.1 + 49982 0.66 0.607082
Target:  5'- -cGGAGGgcgaGUCCGUCauGCgGGAGcACg -3'
miRNA:   3'- guCCUCCg---CAGGCAGggCGgCCUC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.