miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 5' -55.7 NC_001798.1 + 76563 0.75 0.415253
Target:  5'- gCGGCCUucgUCCCGGCGAccggccccGCGCCg----- -3'
miRNA:   3'- -GCCGGA---AGGGCCGCU--------CGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 93537 0.74 0.499024
Target:  5'- aGGagUUCgCCGGCGAGCACCUg---- -3'
miRNA:   3'- gCCggAAG-GGCCGCUCGUGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 30440 0.73 0.508807
Target:  5'- cCGGCC--CCCGGcCGAGCGCCa----- -3'
miRNA:   3'- -GCCGGaaGGGCC-GCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 78962 0.73 0.52861
Target:  5'- uGGCCgcgUCCgGGgGGGCGCCUg---- -3'
miRNA:   3'- gCCGGa--AGGgCCgCUCGUGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 61192 0.73 0.538618
Target:  5'- uCGGCCUgcaCCGGCGcGCGCCg----- -3'
miRNA:   3'- -GCCGGAag-GGCCGCuCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 134989 0.72 0.589496
Target:  5'- gGGCCUggcCCgCGGUGGGCGCCa----- -3'
miRNA:   3'- gCCGGAa--GG-GCCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 109361 0.72 0.589496
Target:  5'- cCGGCCUggccgCCCGGgGAGCAgCg----- -3'
miRNA:   3'- -GCCGGAa----GGGCCgCUCGUgGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 122095 0.71 0.620456
Target:  5'- gGGCCUggagccgCCCGGCGgggGGCGCUUUg--- -3'
miRNA:   3'- gCCGGAa------GGGCCGC---UCGUGGAAaaua -5'
5495 5' -55.7 NC_001798.1 + 116510 0.71 0.661822
Target:  5'- cCGGCCUUCUCGcGgGGGCGCUg----- -3'
miRNA:   3'- -GCCGGAAGGGC-CgCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 109672 0.7 0.696695
Target:  5'- aCGGCCguccuccgggcgccgUUCCUGGCGGGCGCg------ -3'
miRNA:   3'- -GCCGG---------------AAGGGCCGCUCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 143300 0.7 0.702793
Target:  5'- gGGCCguccgccCCCGGCGGGuCGCCg----- -3'
miRNA:   3'- gCCGGaa-----GGGCCGCUC-GUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 154476 0.7 0.712906
Target:  5'- cCGGCCgcucCCCcGCGGGCGCCg----- -3'
miRNA:   3'- -GCCGGaa--GGGcCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 138 0.7 0.712906
Target:  5'- cCGGCCgcucCCCcGCGGGCGCCg----- -3'
miRNA:   3'- -GCCGGaa--GGGcCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 135935 0.7 0.72295
Target:  5'- aCGGCCUUCCgCGGa-GGCGCCc----- -3'
miRNA:   3'- -GCCGGAAGG-GCCgcUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 154525 0.7 0.72295
Target:  5'- -uGCCUUCCC-GCGGGCGCCc----- -3'
miRNA:   3'- gcCGGAAGGGcCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 187 0.7 0.72295
Target:  5'- -uGCCUUCCC-GCGGGCGCCc----- -3'
miRNA:   3'- gcCGGAAGGGcCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 115603 0.7 0.732913
Target:  5'- aCGGCCgggUCCGGUGGGuCGCCg----- -3'
miRNA:   3'- -GCCGGaa-GGGCCGCUC-GUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 91867 0.69 0.742787
Target:  5'- cCGGCCgcCCCGGCcGAGCAUa------ -3'
miRNA:   3'- -GCCGGaaGGGCCG-CUCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 25790 0.69 0.74671
Target:  5'- uGGCCUUCgCCGGCGccguggaguuccuggGGCugCUg---- -3'
miRNA:   3'- gCCGGAAG-GGCCGC---------------UCGugGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 140103 0.68 0.817427
Target:  5'- aGGCCgggcUCCUGGgGcGGCACCUa---- -3'
miRNA:   3'- gCCGGa---AGGGCCgC-UCGUGGAaaaua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.