Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 43115 | 0.68 | 0.826074 |
Target: 5'- aCGGUCgcUUCCGGCGGGCGCg------ -3' miRNA: 3'- -GCCGGa-AGGGCCGCUCGUGgaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 120705 | 0.68 | 0.826074 |
Target: 5'- uCGGCCgu-CCGGCGAacgGCGCCg----- -3' miRNA: 3'- -GCCGGaagGGCCGCU---CGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 131530 | 0.68 | 0.834542 |
Target: 5'- aCGGacccgucaCCUUCCCGgacGCGAGCGCCc----- -3' miRNA: 3'- -GCC--------GGAAGGGC---CGCUCGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 61868 | 0.68 | 0.834542 |
Target: 5'- cCGGCCcagCCCGGCGGcccccucgggcGCGCCc----- -3' miRNA: 3'- -GCCGGaa-GGGCCGCU-----------CGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 53518 | 0.68 | 0.834542 |
Target: 5'- gCGGCCUggacauccccgacgaCCCGGCGGGCgacugcgaccccaGCCUg---- -3' miRNA: 3'- -GCCGGAa--------------GGGCCGCUCG-------------UGGAaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 29399 | 0.68 | 0.834542 |
Target: 5'- gGGCCgcgCCGGCGgGGCGCCg----- -3' miRNA: 3'- gCCGGaagGGCCGC-UCGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 79066 | 0.68 | 0.834542 |
Target: 5'- gGGCCcagCCGGCcuacGAGCGCCUUUc-- -3' miRNA: 3'- gCCGGaagGGCCG----CUCGUGGAAAaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 103386 | 0.67 | 0.842822 |
Target: 5'- gGGUCguugaCCaCGGCGAGCACCc----- -3' miRNA: 3'- gCCGGaa---GG-GCCGCUCGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 3259 | 0.67 | 0.842822 |
Target: 5'- gGcGCCguagCCGGCGGGCACCg----- -3' miRNA: 3'- gC-CGGaag-GGCCGCUCGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 127744 | 0.67 | 0.858786 |
Target: 5'- gCGGCCgccgcaacaCCCGGCGccaAGCGCCc----- -3' miRNA: 3'- -GCCGGaa-------GGGCCGC---UCGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 65603 | 0.67 | 0.858786 |
Target: 5'- gGGCCUccUCgCCGGCGAGgaCGCCc----- -3' miRNA: 3'- gCCGGA--AG-GGCCGCUC--GUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 32045 | 0.67 | 0.858786 |
Target: 5'- gGGCCgcucgcCCCGGCGuccgcgGGCGCCg----- -3' miRNA: 3'- gCCGGaa----GGGCCGC------UCGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 104099 | 0.67 | 0.866457 |
Target: 5'- aGcGCCg-CCUGGCGGGCGCCc----- -3' miRNA: 3'- gC-CGGaaGGGCCGCUCGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 138121 | 0.66 | 0.881148 |
Target: 5'- aCGGCCgucugaaacgCCUGGCGaAGCugCUg---- -3' miRNA: 3'- -GCCGGaa--------GGGCCGC-UCGugGAaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 101797 | 0.66 | 0.888156 |
Target: 5'- cCGGCC-UCCgCGcCGGGCGCCUc---- -3' miRNA: 3'- -GCCGGaAGG-GCcGCUCGUGGAaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 58109 | 0.66 | 0.888156 |
Target: 5'- gCGGCCgcccagggCCCGGCGucuGGguCCUUg--- -3' miRNA: 3'- -GCCGGaa------GGGCCGC---UCguGGAAaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 39063 | 0.66 | 0.888156 |
Target: 5'- gGGCCUcgaugagauuuUCCUGGCGcAGCACg------ -3' miRNA: 3'- gCCGGA-----------AGGGCCGC-UCGUGgaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 23920 | 0.66 | 0.888156 |
Target: 5'- aGGCCUcgggcgcCCCGGCGcccgugugGGCGCCg----- -3' miRNA: 3'- gCCGGAa------GGGCCGC--------UCGUGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 23712 | 0.66 | 0.894933 |
Target: 5'- aCGGCCgggcggcCCCGGCGGGUcgagcuggacGCCg----- -3' miRNA: 3'- -GCCGGaa-----GGGCCGCUCG----------UGGaaaaua -5' |
|||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 4351 | 0.66 | 0.901475 |
Target: 5'- gCGGCCgagCgCCGGCGGggggcGCGCCg----- -3' miRNA: 3'- -GCCGGaa-G-GGCCGCU-----CGUGGaaaaua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home