Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 3259 | 0.67 | 0.842822 |
Target: 5'- gGcGCCguagCCGGCGGGCACCg----- -3' miRNA: 3'- gC-CGGaag-GGCCGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 103386 | 0.67 | 0.842822 |
Target: 5'- gGGUCguugaCCaCGGCGAGCACCc----- -3' miRNA: 3'- gCCGGaa---GG-GCCGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 29399 | 0.68 | 0.834542 |
Target: 5'- gGGCCgcgCCGGCGgGGCGCCg----- -3' miRNA: 3'- gCCGGaagGGCCGC-UCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 79066 | 0.68 | 0.834542 |
Target: 5'- gGGCCcagCCGGCcuacGAGCGCCUUUc-- -3' miRNA: 3'- gCCGGaagGGCCG----CUCGUGGAAAaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 53518 | 0.68 | 0.834542 |
Target: 5'- gCGGCCUggacauccccgacgaCCCGGCGGGCgacugcgaccccaGCCUg---- -3' miRNA: 3'- -GCCGGAa--------------GGGCCGCUCG-------------UGGAaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 61868 | 0.68 | 0.834542 |
Target: 5'- cCGGCCcagCCCGGCGGcccccucgggcGCGCCc----- -3' miRNA: 3'- -GCCGGaa-GGGCCGCU-----------CGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 131530 | 0.68 | 0.834542 |
Target: 5'- aCGGacccgucaCCUUCCCGgacGCGAGCGCCc----- -3' miRNA: 3'- -GCC--------GGAAGGGC---CGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 120705 | 0.68 | 0.826074 |
Target: 5'- uCGGCCgu-CCGGCGAacgGCGCCg----- -3' miRNA: 3'- -GCCGGaagGGCCGCU---CGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 43115 | 0.68 | 0.826074 |
Target: 5'- aCGGUCgcUUCCGGCGGGCGCg------ -3' miRNA: 3'- -GCCGGa-AGGGCCGCUCGUGgaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 140103 | 0.68 | 0.817427 |
Target: 5'- aGGCCgggcUCCUGGgGcGGCACCUa---- -3' miRNA: 3'- gCCGGa---AGGGCCgC-UCGUGGAaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 25790 | 0.69 | 0.74671 |
Target: 5'- uGGCCUUCgCCGGCGccguggaguuccuggGGCugCUg---- -3' miRNA: 3'- gCCGGAAG-GGCCGC---------------UCGugGAaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 91867 | 0.69 | 0.742787 |
Target: 5'- cCGGCCgcCCCGGCcGAGCAUa------ -3' miRNA: 3'- -GCCGGaaGGGCCG-CUCGUGgaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 115603 | 0.7 | 0.732913 |
Target: 5'- aCGGCCgggUCCGGUGGGuCGCCg----- -3' miRNA: 3'- -GCCGGaa-GGGCCGCUC-GUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 154525 | 0.7 | 0.72295 |
Target: 5'- -uGCCUUCCC-GCGGGCGCCc----- -3' miRNA: 3'- gcCGGAAGGGcCGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 187 | 0.7 | 0.72295 |
Target: 5'- -uGCCUUCCC-GCGGGCGCCc----- -3' miRNA: 3'- gcCGGAAGGGcCGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 135935 | 0.7 | 0.72295 |
Target: 5'- aCGGCCUUCCgCGGa-GGCGCCc----- -3' miRNA: 3'- -GCCGGAAGG-GCCgcUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 154476 | 0.7 | 0.712906 |
Target: 5'- cCGGCCgcucCCCcGCGGGCGCCg----- -3' miRNA: 3'- -GCCGGaa--GGGcCGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 138 | 0.7 | 0.712906 |
Target: 5'- cCGGCCgcucCCCcGCGGGCGCCg----- -3' miRNA: 3'- -GCCGGaa--GGGcCGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 143300 | 0.7 | 0.702793 |
Target: 5'- gGGCCguccgccCCCGGCGGGuCGCCg----- -3' miRNA: 3'- gCCGGaa-----GGGCCGCUC-GUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 109672 | 0.7 | 0.696695 |
Target: 5'- aCGGCCguccuccgggcgccgUUCCUGGCGGGCGCg------ -3' miRNA: 3'- -GCCGG---------------AAGGGCCGCUCGUGgaaaaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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