miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 5' -55.7 NC_001798.1 + 70318 0.66 0.901475
Target:  5'- gCGGUCggCCCGGCGgaGGCGCg------ -3'
miRNA:   3'- -GCCGGaaGGGCCGC--UCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 76563 0.75 0.415253
Target:  5'- gCGGCCUucgUCCCGGCGAccggccccGCGCCg----- -3'
miRNA:   3'- -GCCGGA---AGGGCCGCU--------CGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 78558 0.66 0.910234
Target:  5'- gGGCCUgcgggaggcgcuggCCgCGcGCGAGCGCCg----- -3'
miRNA:   3'- gCCGGAa-------------GG-GC-CGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 78962 0.73 0.52861
Target:  5'- uGGCCgcgUCCgGGgGGGCGCCUg---- -3'
miRNA:   3'- gCCGGa--AGGgCCgCUCGUGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 79066 0.68 0.834542
Target:  5'- gGGCCcagCCGGCcuacGAGCGCCUUUc-- -3'
miRNA:   3'- gCCGGaagGGCCG----CUCGUGGAAAaua -5'
5495 5' -55.7 NC_001798.1 + 80735 0.66 0.904026
Target:  5'- aCGGCCUUCuCCcGCGAGUcggaacuggaacuguGCCUg---- -3'
miRNA:   3'- -GCCGGAAG-GGcCGCUCG---------------UGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 86854 0.66 0.90778
Target:  5'- cCGGCCgcgacaagaCCCGGCGGcggucGCGCUUUUc-- -3'
miRNA:   3'- -GCCGGaa-------GGGCCGCU-----CGUGGAAAaua -5'
5495 5' -55.7 NC_001798.1 + 91867 0.69 0.742787
Target:  5'- cCGGCCgcCCCGGCcGAGCAUa------ -3'
miRNA:   3'- -GCCGGaaGGGCCG-CUCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 93537 0.74 0.499024
Target:  5'- aGGagUUCgCCGGCGAGCACCUg---- -3'
miRNA:   3'- gCCggAAG-GGCCGCUCGUGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 101797 0.66 0.888156
Target:  5'- cCGGCC-UCCgCGcCGGGCGCCUc---- -3'
miRNA:   3'- -GCCGGaAGG-GCcGCUCGUGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 103386 0.67 0.842822
Target:  5'- gGGUCguugaCCaCGGCGAGCACCc----- -3'
miRNA:   3'- gCCGGaa---GG-GCCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 104099 0.67 0.866457
Target:  5'- aGcGCCg-CCUGGCGGGCGCCc----- -3'
miRNA:   3'- gC-CGGaaGGGCCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 109361 0.72 0.589496
Target:  5'- cCGGCCUggccgCCCGGgGAGCAgCg----- -3'
miRNA:   3'- -GCCGGAa----GGGCCgCUCGUgGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 109672 0.7 0.696695
Target:  5'- aCGGCCguccuccgggcgccgUUCCUGGCGGGCGCg------ -3'
miRNA:   3'- -GCCGG---------------AAGGGCCGCUCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 110556 0.66 0.913843
Target:  5'- gCGGC---CCUGGCGGGCAuCCUUa--- -3'
miRNA:   3'- -GCCGgaaGGGCCGCUCGU-GGAAaaua -5'
5495 5' -55.7 NC_001798.1 + 115603 0.7 0.732913
Target:  5'- aCGGCCgggUCCGGUGGGuCGCCg----- -3'
miRNA:   3'- -GCCGGaa-GGGCCGCUC-GUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 116510 0.71 0.661822
Target:  5'- cCGGCCUUCUCGcGgGGGCGCUg----- -3'
miRNA:   3'- -GCCGGAAGGGC-CgCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 120705 0.68 0.826074
Target:  5'- uCGGCCgu-CCGGCGAacgGCGCCg----- -3'
miRNA:   3'- -GCCGGaagGGCCGCU---CGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 122095 0.71 0.620456
Target:  5'- gGGCCUggagccgCCCGGCGgggGGCGCUUUg--- -3'
miRNA:   3'- gCCGGAa------GGGCCGC---UCGUGGAAaaua -5'
5495 5' -55.7 NC_001798.1 + 127744 0.67 0.858786
Target:  5'- gCGGCCgccgcaacaCCCGGCGccaAGCGCCc----- -3'
miRNA:   3'- -GCCGGaa-------GGGCCGC---UCGUGGaaaaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.