Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5495 | 5' | -55.7 | NC_001798.1 | + | 138 | 0.7 | 0.712906 |
Target: 5'- cCGGCCgcucCCCcGCGGGCGCCg----- -3' miRNA: 3'- -GCCGGaa--GGGcCGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 187 | 0.7 | 0.72295 |
Target: 5'- -uGCCUUCCC-GCGGGCGCCc----- -3' miRNA: 3'- gcCGGAAGGGcCGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 2617 | 0.66 | 0.90778 |
Target: 5'- gGGCgCcgCCCGGCG-GCGCCc----- -3' miRNA: 3'- gCCG-GaaGGGCCGCuCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 3259 | 0.67 | 0.842822 |
Target: 5'- gGcGCCguagCCGGCGGGCACCg----- -3' miRNA: 3'- gC-CGGaag-GGCCGCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 4351 | 0.66 | 0.901475 |
Target: 5'- gCGGCCgagCgCCGGCGGggggcGCGCCg----- -3' miRNA: 3'- -GCCGGaa-G-GGCCGCU-----CGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 5956 | 0.66 | 0.90778 |
Target: 5'- gGGCCggcgUCCCGGuCGccgccGCACCa----- -3' miRNA: 3'- gCCGGa---AGGGCC-GCu----CGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 23712 | 0.66 | 0.894933 |
Target: 5'- aCGGCCgggcggcCCCGGCGGGUcgagcuggacGCCg----- -3' miRNA: 3'- -GCCGGaa-----GGGCCGCUCG----------UGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 23920 | 0.66 | 0.888156 |
Target: 5'- aGGCCUcgggcgcCCCGGCGcccgugugGGCGCCg----- -3' miRNA: 3'- gCCGGAa------GGGCCGC--------UCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 25790 | 0.69 | 0.74671 |
Target: 5'- uGGCCUUCgCCGGCGccguggaguuccuggGGCugCUg---- -3' miRNA: 3'- gCCGGAAG-GGCCGC---------------UCGugGAaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 29399 | 0.68 | 0.834542 |
Target: 5'- gGGCCgcgCCGGCGgGGCGCCg----- -3' miRNA: 3'- gCCGGaagGGCCGC-UCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 30440 | 0.73 | 0.508807 |
Target: 5'- cCGGCC--CCCGGcCGAGCGCCa----- -3' miRNA: 3'- -GCCGGaaGGGCC-GCUCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 32045 | 0.67 | 0.858786 |
Target: 5'- gGGCCgcucgcCCCGGCGuccgcgGGCGCCg----- -3' miRNA: 3'- gCCGGaa----GGGCCGC------UCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 39063 | 0.66 | 0.888156 |
Target: 5'- gGGCCUcgaugagauuuUCCUGGCGcAGCACg------ -3' miRNA: 3'- gCCGGA-----------AGGGCCGC-UCGUGgaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 43115 | 0.68 | 0.826074 |
Target: 5'- aCGGUCgcUUCCGGCGGGCGCg------ -3' miRNA: 3'- -GCCGGa-AGGGCCGCUCGUGgaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 53518 | 0.68 | 0.834542 |
Target: 5'- gCGGCCUggacauccccgacgaCCCGGCGGGCgacugcgaccccaGCCUg---- -3' miRNA: 3'- -GCCGGAa--------------GGGCCGCUCG-------------UGGAaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 58109 | 0.66 | 0.888156 |
Target: 5'- gCGGCCgcccagggCCCGGCGucuGGguCCUUg--- -3' miRNA: 3'- -GCCGGaa------GGGCCGC---UCguGGAAaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 61192 | 0.73 | 0.538618 |
Target: 5'- uCGGCCUgcaCCGGCGcGCGCCg----- -3' miRNA: 3'- -GCCGGAag-GGCCGCuCGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 61868 | 0.68 | 0.834542 |
Target: 5'- cCGGCCcagCCCGGCGGcccccucgggcGCGCCc----- -3' miRNA: 3'- -GCCGGaa-GGGCCGCU-----------CGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 62282 | 0.66 | 0.90778 |
Target: 5'- cCGGgCggCCCGGCGGgagcGCGCCa----- -3' miRNA: 3'- -GCCgGaaGGGCCGCU----CGUGGaaaaua -5' |
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5495 | 5' | -55.7 | NC_001798.1 | + | 65603 | 0.67 | 0.858786 |
Target: 5'- gGGCCUccUCgCCGGCGAGgaCGCCc----- -3' miRNA: 3'- gCCGGA--AG-GGCCGCUC--GUGGaaaaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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