miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 5' -55.7 NC_001798.1 + 154525 0.7 0.72295
Target:  5'- -uGCCUUCCC-GCGGGCGCCc----- -3'
miRNA:   3'- gcCGGAAGGGcCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 154476 0.7 0.712906
Target:  5'- cCGGCCgcucCCCcGCGGGCGCCg----- -3'
miRNA:   3'- -GCCGGaa--GGGcCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 147213 0.66 0.901475
Target:  5'- cCGGCCcgggccCCCGGCgGAGCGCg------ -3'
miRNA:   3'- -GCCGGaa----GGGCCG-CUCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 143300 0.7 0.702793
Target:  5'- gGGCCguccgccCCCGGCGGGuCGCCg----- -3'
miRNA:   3'- gCCGGaa-----GGGCCGCUC-GUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 140103 0.68 0.817427
Target:  5'- aGGCCgggcUCCUGGgGcGGCACCUa---- -3'
miRNA:   3'- gCCGGa---AGGGCCgC-UCGUGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 138121 0.66 0.881148
Target:  5'- aCGGCCgucugaaacgCCUGGCGaAGCugCUg---- -3'
miRNA:   3'- -GCCGGaa--------GGGCCGC-UCGugGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 135935 0.7 0.72295
Target:  5'- aCGGCCUUCCgCGGa-GGCGCCc----- -3'
miRNA:   3'- -GCCGGAAGG-GCCgcUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 134989 0.72 0.589496
Target:  5'- gGGCCUggcCCgCGGUGGGCGCCa----- -3'
miRNA:   3'- gCCGGAa--GG-GCCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 131530 0.68 0.834542
Target:  5'- aCGGacccgucaCCUUCCCGgacGCGAGCGCCc----- -3'
miRNA:   3'- -GCC--------GGAAGGGC---CGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 127744 0.67 0.858786
Target:  5'- gCGGCCgccgcaacaCCCGGCGccaAGCGCCc----- -3'
miRNA:   3'- -GCCGGaa-------GGGCCGC---UCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 122095 0.71 0.620456
Target:  5'- gGGCCUggagccgCCCGGCGgggGGCGCUUUg--- -3'
miRNA:   3'- gCCGGAa------GGGCCGC---UCGUGGAAaaua -5'
5495 5' -55.7 NC_001798.1 + 120705 0.68 0.826074
Target:  5'- uCGGCCgu-CCGGCGAacgGCGCCg----- -3'
miRNA:   3'- -GCCGGaagGGCCGCU---CGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 116510 0.71 0.661822
Target:  5'- cCGGCCUUCUCGcGgGGGCGCUg----- -3'
miRNA:   3'- -GCCGGAAGGGC-CgCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 115603 0.7 0.732913
Target:  5'- aCGGCCgggUCCGGUGGGuCGCCg----- -3'
miRNA:   3'- -GCCGGaa-GGGCCGCUC-GUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 110556 0.66 0.913843
Target:  5'- gCGGC---CCUGGCGGGCAuCCUUa--- -3'
miRNA:   3'- -GCCGgaaGGGCCGCUCGU-GGAAaaua -5'
5495 5' -55.7 NC_001798.1 + 109672 0.7 0.696695
Target:  5'- aCGGCCguccuccgggcgccgUUCCUGGCGGGCGCg------ -3'
miRNA:   3'- -GCCGG---------------AAGGGCCGCUCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 109361 0.72 0.589496
Target:  5'- cCGGCCUggccgCCCGGgGAGCAgCg----- -3'
miRNA:   3'- -GCCGGAa----GGGCCgCUCGUgGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 104099 0.67 0.866457
Target:  5'- aGcGCCg-CCUGGCGGGCGCCc----- -3'
miRNA:   3'- gC-CGGaaGGGCCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 103386 0.67 0.842822
Target:  5'- gGGUCguugaCCaCGGCGAGCACCc----- -3'
miRNA:   3'- gCCGGaa---GG-GCCGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 101797 0.66 0.888156
Target:  5'- cCGGCC-UCCgCGcCGGGCGCCUc---- -3'
miRNA:   3'- -GCCGGaAGG-GCcGCUCGUGGAaaaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.