miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5497 3' -59.5 NC_001798.1 + 149052 0.66 0.805112
Target:  5'- -aUGCUGGUguguguuGCUGuUC-GGGGCCGUGu -3'
miRNA:   3'- ggACGACCA-------CGGCuAGaCCCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 95218 0.66 0.802528
Target:  5'- gCCUGCUGGgcggcaaaaacgcgUGCCcgcugcuGAUCUuuGACCGCa -3'
miRNA:   3'- -GGACGACC--------------ACGG-------CUAGAccCUGGCGc -5'
5497 3' -59.5 NC_001798.1 + 123981 0.66 0.797322
Target:  5'- aCUGCUGG-GCCauggaugauGAcCUGGGGUCGCu -3'
miRNA:   3'- gGACGACCaCGG---------CUaGACCCUGGCGc -5'
5497 3' -59.5 NC_001798.1 + 51804 0.66 0.788533
Target:  5'- uCgUGCgGGUGgCGAUCaacgggUGGGuCUGCGg -3'
miRNA:   3'- -GgACGaCCACgGCUAG------ACCCuGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 52870 0.66 0.788533
Target:  5'- uCCgUGCUGGgGCCGc---GGGuCCGCGc -3'
miRNA:   3'- -GG-ACGACCaCGGCuagaCCCuGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 45253 0.66 0.770568
Target:  5'- uCCUGCagaUGuacaUGUCGGUg-GGGGCCGCGg -3'
miRNA:   3'- -GGACG---ACc---ACGGCUAgaCCCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 128247 0.66 0.770568
Target:  5'- gCUGgaGGcgGCCGGcaugGuGGACCGCGg -3'
miRNA:   3'- gGACgaCCa-CGGCUaga-C-CCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 104576 0.66 0.770568
Target:  5'- -gUGCUGGUGUCucggggaacGUCgcccGGGGCCGCc -3'
miRNA:   3'- ggACGACCACGGc--------UAGa---CCCUGGCGc -5'
5497 3' -59.5 NC_001798.1 + 43661 0.66 0.761407
Target:  5'- uCCgUGCUGGccGCgGggCUGGGGUCGUGg -3'
miRNA:   3'- -GG-ACGACCa-CGgCuaGACCCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 56531 0.67 0.755858
Target:  5'- --gGC-GGUGCCGGggcgcccgcacgaugUCUGGGAC-GCGa -3'
miRNA:   3'- ggaCGaCCACGGCU---------------AGACCCUGgCGC- -5'
5497 3' -59.5 NC_001798.1 + 44903 0.67 0.752139
Target:  5'- cCCUGCUcgGGUGCUGugcggUUGGGgaaCGCGc -3'
miRNA:   3'- -GGACGA--CCACGGCua---GACCCug-GCGC- -5'
5497 3' -59.5 NC_001798.1 + 139039 0.67 0.752139
Target:  5'- aCCUGCgaaccaGCCGcugcggCUGGaGGCCGCGg -3'
miRNA:   3'- -GGACGacca--CGGCua----GACC-CUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 90738 0.67 0.742771
Target:  5'- aCUGCaGGUGCCGAUCcaccuCCGCc -3'
miRNA:   3'- gGACGaCCACGGCUAGacccuGGCGc -5'
5497 3' -59.5 NC_001798.1 + 42152 0.67 0.742771
Target:  5'- gCUGUggaGGacGCgGAUCUcccgcGGGGCCGCGg -3'
miRNA:   3'- gGACGa--CCa-CGgCUAGA-----CCCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 109442 0.67 0.742771
Target:  5'- gCCUGCggcUGGagGCgCGccucgggcAUCUGGuGGCCGCGa -3'
miRNA:   3'- -GGACG---ACCa-CG-GC--------UAGACC-CUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 140196 0.67 0.723773
Target:  5'- gCCUGCg---GCCGGUgCUGGuGugCGUGg -3'
miRNA:   3'- -GGACGaccaCGGCUA-GACC-CugGCGC- -5'
5497 3' -59.5 NC_001798.1 + 100862 0.67 0.704478
Target:  5'- gCUGCUGGUccugGCCGGcCUGG--UCGCGg -3'
miRNA:   3'- gGACGACCA----CGGCUaGACCcuGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 59563 0.68 0.665266
Target:  5'- --gGCUGGggcucgcgucGCCGGUCUGGaGGUCGCGa -3'
miRNA:   3'- ggaCGACCa---------CGGCUAGACC-CUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 40119 0.68 0.645477
Target:  5'- gUUGUaGGUcGCCGGggCUGGGAUgGCGg -3'
miRNA:   3'- gGACGaCCA-CGGCUa-GACCCUGgCGC- -5'
5497 3' -59.5 NC_001798.1 + 98557 0.68 0.645477
Target:  5'- --cGCUGGUcGUgGGggcgCUGGuGGCCGCGg -3'
miRNA:   3'- ggaCGACCA-CGgCUa---GACC-CUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.