miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5498 3' -62.8 NC_001798.1 + 117456 0.66 0.640405
Target:  5'- cGGgGCCCCcCCgCUGcuagacaacgCGGCCGCCGu -3'
miRNA:   3'- -CUgCGGGGaGG-GACaca-------GCCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 35752 0.66 0.632607
Target:  5'- -cCGCCCaCUCCCcgc-UCGGCCucuCCGg -3'
miRNA:   3'- cuGCGGG-GAGGGacacAGCCGGu--GGC- -5'
5498 3' -62.8 NC_001798.1 + 154497 0.66 0.632607
Target:  5'- -cCGCCCCUCCCcccg-CGcGCCGCgGg -3'
miRNA:   3'- cuGCGGGGAGGGacacaGC-CGGUGgC- -5'
5498 3' -62.8 NC_001798.1 + 465 0.66 0.632607
Target:  5'- --gGCCgCCUCCCccg--CGGCCGCCu -3'
miRNA:   3'- cugCGG-GGAGGGacacaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 159 0.66 0.632607
Target:  5'- -cCGCCCCUCCCcccg-CGcGCCGCgGg -3'
miRNA:   3'- cuGCGGGGAGGGacacaGC-CGGUGgC- -5'
5498 3' -62.8 NC_001798.1 + 91839 0.66 0.613119
Target:  5'- -cCGCCCCUCCCagcacgccGUacauauacCGGCCGCCc -3'
miRNA:   3'- cuGCGGGGAGGGaca-----CA--------GCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 81785 0.66 0.613119
Target:  5'- -cCGCCCCcCCCgagggGUGgCGuCCGCCGg -3'
miRNA:   3'- cuGCGGGGaGGGa----CACaGCcGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 422 0.66 0.613119
Target:  5'- cGGCaGCCCCUCCCccccgCGcGCCACgGg -3'
miRNA:   3'- -CUG-CGGGGAGGGacacaGC-CGGUGgC- -5'
5498 3' -62.8 NC_001798.1 + 104981 0.66 0.603391
Target:  5'- uGCGCCCgUCUCgaaaGUCGGCgCugCGg -3'
miRNA:   3'- cUGCGGGgAGGGaca-CAGCCG-GugGC- -5'
5498 3' -62.8 NC_001798.1 + 100401 0.66 0.603391
Target:  5'- cGACGCgCUCgagCCgUGcaccGUgGGCCACCGg -3'
miRNA:   3'- -CUGCG-GGGa--GGgACa---CAgCCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 24703 0.66 0.593682
Target:  5'- cGCGCCCCcgcgCCCgGggcccgcgGgcgCGGCCGCCc -3'
miRNA:   3'- cUGCGGGGa---GGGaCa-------Ca--GCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 7870 0.67 0.583999
Target:  5'- -uCGCCgCUguggCCCUGgcgGaCGGCCGCCa -3'
miRNA:   3'- cuGCGG-GGa---GGGACa--CaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 154459 0.67 0.574347
Target:  5'- -cCGUCCCUCCCccgGaGcCGGCCGCUc -3'
miRNA:   3'- cuGCGGGGAGGGa--CaCaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 121262 0.67 0.574347
Target:  5'- gGGgGUCCCgcuguccgCCCUcGUGcgCGGCCGCCc -3'
miRNA:   3'- -CUgCGGGGa-------GGGA-CACa-GCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 104653 0.67 0.574347
Target:  5'- gGugGCCagggCCCcGUGcucguagCGGCCGCCGg -3'
miRNA:   3'- -CugCGGgga-GGGaCACa------GCCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 121 0.67 0.574347
Target:  5'- -cCGUCCCUCCCccgGaGcCGGCCGCUc -3'
miRNA:   3'- cuGCGGGGAGGGa--CaCaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 109596 0.67 0.564733
Target:  5'- cGACGCCCUguacgCCgaGUuucUCGGCgGCCGc -3'
miRNA:   3'- -CUGCGGGGa----GGgaCAc--AGCCGgUGGC- -5'
5498 3' -62.8 NC_001798.1 + 77239 0.67 0.564733
Target:  5'- uGGCGCCCUggcggaCgCgGUGUCGGCC-CUGg -3'
miRNA:   3'- -CUGCGGGGa-----GgGaCACAGCCGGuGGC- -5'
5498 3' -62.8 NC_001798.1 + 115834 0.67 0.564733
Target:  5'- uGACGCCCggggCCUGgagcucggcGUUGGCCGCCa -3'
miRNA:   3'- -CUGCGGGgag-GGACa--------CAGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 134216 0.67 0.555161
Target:  5'- --aGCCCCUgggggacccgaCCCUGUGgCGGgCGCUGu -3'
miRNA:   3'- cugCGGGGA-----------GGGACACaGCCgGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.