miRNA display CGI


Results 41 - 60 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 126299 0.73 0.326883
Target:  5'- cGAGACGGC-GcCGUCUCCggaGCCCGCc -3'
miRNA:   3'- -CUUUGCCGuCaGCGGAGGgg-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 76875 0.73 0.334094
Target:  5'- -uGGCGacccuGCGG--GCCUCCCUGCCCGCg -3'
miRNA:   3'- cuUUGC-----CGUCagCGGAGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 23111 0.73 0.348861
Target:  5'- aGAAGCGGCccgcUCGCCUUCuCCG-CCGCg -3'
miRNA:   3'- -CUUUGCCGuc--AGCGGAGG-GGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 98656 0.73 0.348861
Target:  5'- cGAACGGgGGUccCGCCUCCCgG-CCGCc -3'
miRNA:   3'- cUUUGCCgUCA--GCGGAGGGgCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 70030 0.72 0.356418
Target:  5'- -cGGCGGCAGUCauucccguuuggGCCcgcggUCUCCGCgCCGCg -3'
miRNA:   3'- cuUUGCCGUCAG------------CGG-----AGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 147714 0.72 0.356418
Target:  5'- aGAAAgGGCAGgcaggucaGCCgcaCCGCCCGCg -3'
miRNA:   3'- -CUUUgCCGUCag------CGGaggGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 96988 0.72 0.356418
Target:  5'- cGGGCGGCGGggccaggGCCggcCCgCCGCCCGCc -3'
miRNA:   3'- cUUUGCCGUCag-----CGGa--GG-GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 86871 0.72 0.364088
Target:  5'- -cGGCGGCGGUCGCgcuuUUCCgCCGCCgGg -3'
miRNA:   3'- cuUUGCCGUCAGCG----GAGG-GGCGGgCg -5'
5499 5' -60.8 NC_001798.1 + 25164 0.72 0.364088
Target:  5'- --cGCGGgGGccgCGCC-CCCCGCcCCGCc -3'
miRNA:   3'- cuuUGCCgUCa--GCGGaGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 62468 0.72 0.367188
Target:  5'- -cGACGGCgcccGGUCGuCCUccucggagauacucaCCCCGCCCGa -3'
miRNA:   3'- cuUUGCCG----UCAGC-GGA---------------GGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 74724 0.72 0.371872
Target:  5'- -uGugGGCAG-CaGCCcuggaggggaCCCCGCCCGCg -3'
miRNA:   3'- cuUugCCGUCaG-CGGa---------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 85286 0.72 0.379769
Target:  5'- cGggGgGGCGGggGCCggggUCCGCCCGCg -3'
miRNA:   3'- -CuuUgCCGUCagCGGag--GGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 53814 0.72 0.395079
Target:  5'- uGGACGGCGgacaaguacguguGUCGCCgccugggCCCCGCCgauCGCc -3'
miRNA:   3'- cUUUGCCGU-------------CAGCGGa------GGGGCGG---GCG- -5'
5499 5' -60.8 NC_001798.1 + 72814 0.72 0.395896
Target:  5'- ---cUGGCGG-CGCCUCUCgGCCgGCu -3'
miRNA:   3'- cuuuGCCGUCaGCGGAGGGgCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 110911 0.71 0.412458
Target:  5'- --uGCGGcCAGcCGCCcCCgCCgGCCCGCg -3'
miRNA:   3'- cuuUGCC-GUCaGCGGaGG-GG-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 127760 0.71 0.420898
Target:  5'- ---cCGGCGccaagCGCCccgcggaCCCCGCCCGCg -3'
miRNA:   3'- cuuuGCCGUca---GCGGa------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 27716 0.71 0.420898
Target:  5'- cGggGCGGgAGUCcccguccuGCCgccgCCCCuuaagaggGCCCGCa -3'
miRNA:   3'- -CuuUGCCgUCAG--------CGGa---GGGG--------CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 104146 0.71 0.420898
Target:  5'- -cGACGcCAGUgGCCgCCCCGCCUGg -3'
miRNA:   3'- cuUUGCcGUCAgCGGaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 46428 0.71 0.420898
Target:  5'- ---cCGGCGGUCGCgagcgCCCCGUCCa- -3'
miRNA:   3'- cuuuGCCGUCAGCGga---GGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 127935 0.71 0.426012
Target:  5'- -cGACGGCGGg-GCCccgggcgaaaaggCCCgGCCCGCg -3'
miRNA:   3'- cuUUGCCGUCagCGGa------------GGGgCGGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.