Results 1 - 20 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5500 | 5' | -50.6 | NC_001798.1 | + | 77204 | 0.84 | 0.316197 |
Target: 5'- cCCGcgGCGACGgugGACGCGGCCGUGCGg -3' miRNA: 3'- aGGCuaUGUUGU---UUGCGCUGGCGUGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 53304 | 0.66 | 0.996728 |
Target: 5'- gCCGAUcGCAGCGucCGgcUGGCgGCGCGg -3' miRNA: 3'- aGGCUA-UGUUGUuuGC--GCUGgCGUGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 78205 | 0.66 | 0.996728 |
Target: 5'- gCCGAcUACGugGAGCuccGCGAUCGcCugGa -3' miRNA: 3'- aGGCU-AUGUugUUUG---CGCUGGC-GugC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 86095 | 0.66 | 0.996674 |
Target: 5'- cCCGGcUGCGcgccgccGCGGACGCccGCCGCGCc -3' miRNA: 3'- aGGCU-AUGU-------UGUUUGCGc-UGGCGUGc -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 35048 | 0.66 | 0.996674 |
Target: 5'- cCCGAgGCAAgAGGCG-GACCcucggagGCGCGg -3' miRNA: 3'- aGGCUaUGUUgUUUGCgCUGG-------CGUGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 105606 | 0.66 | 0.996156 |
Target: 5'- gUUCGAggGCGGCGGGCGggcgaCGACgGCGCu -3' miRNA: 3'- -AGGCUa-UGUUGUUUGC-----GCUGgCGUGc -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 92540 | 0.66 | 0.996156 |
Target: 5'- cCUGAcgcggcucUGCgAGCGGGCGCGcCCGCAUu -3' miRNA: 3'- aGGCU--------AUG-UUGUUUGCGCuGGCGUGc -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 76746 | 0.66 | 0.996156 |
Target: 5'- -gCGAUGCucAACGAcGCGCGGgaGCGCGc -3' miRNA: 3'- agGCUAUG--UUGUU-UGCGCUggCGUGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 67620 | 0.66 | 0.996156 |
Target: 5'- cUCCGGcgAgGGCGGAUGCGGCaGgGCGg -3' miRNA: 3'- -AGGCUa-UgUUGUUUGCGCUGgCgUGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 55734 | 0.66 | 0.996728 |
Target: 5'- gCCaGGUGCuug----GCGGCCGCACGg -3' miRNA: 3'- aGG-CUAUGuuguuugCGCUGGCGUGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 79374 | 0.66 | 0.996728 |
Target: 5'- gCCGGcgGCcaGACGGGCGCGGgcgcggaguCCGCGCc -3' miRNA: 3'- aGGCUa-UG--UUGUUUGCGCU---------GGCGUGc -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 82998 | 0.66 | 0.996728 |
Target: 5'- gCCGcAUACAACAAcagcuGCaGCGGacCCGCAgGg -3' miRNA: 3'- aGGC-UAUGUUGUU-----UG-CGCU--GGCGUgC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 138163 | 0.66 | 0.997228 |
Target: 5'- cCCGGguccuGgGGGCGCGACC-CGCGg -3' miRNA: 3'- aGGCUaugu-UgUUUGCGCUGGcGUGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 24749 | 0.66 | 0.997228 |
Target: 5'- gCCGAcGCGccccGCcuGCGCGccugGCUGCGCGa -3' miRNA: 3'- aGGCUaUGU----UGuuUGCGC----UGGCGUGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 117208 | 0.66 | 0.997181 |
Target: 5'- aCCGucGUGCGGCAGGaccgcuuCGUGACCGagaACGu -3' miRNA: 3'- aGGC--UAUGUUGUUU-------GCGCUGGCg--UGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 135332 | 0.66 | 0.996728 |
Target: 5'- cCUGGUGC--CGGACGCGugCGaCGCc -3' miRNA: 3'- aGGCUAUGuuGUUUGCGCugGC-GUGc -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 97247 | 0.66 | 0.996728 |
Target: 5'- gUUCGG-GCGGCGGGCGgagcacuuCGAUCGCGCGu -3' miRNA: 3'- -AGGCUaUGUUGUUUGC--------GCUGGCGUGC- -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 58415 | 0.66 | 0.996728 |
Target: 5'- -gCGcagGCGGCcAGCGCGAgCGCGCc -3' miRNA: 3'- agGCua-UGUUGuUUGCGCUgGCGUGc -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 131289 | 0.66 | 0.996728 |
Target: 5'- gCCGAgACGAUGAACGuCGccACCuGCACa -3' miRNA: 3'- aGGCUaUGUUGUUUGC-GC--UGG-CGUGc -5' |
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5500 | 5' | -50.6 | NC_001798.1 | + | 121713 | 0.66 | 0.996728 |
Target: 5'- gCCGccGCGACGGAgGCGGCgGCcCa -3' miRNA: 3'- aGGCuaUGUUGUUUgCGCUGgCGuGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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