miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 3' -58.9 NC_001798.1 + 25479 0.66 0.804121
Target:  5'- -cGGcc--CGCUGCGCGCCUCGgGCCc -3'
miRNA:   3'- aaCCaacaGCGGUGUGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 122709 0.66 0.804121
Target:  5'- -aGGUga-CGCgGCGCuuCCCCGUGCUc -3'
miRNA:   3'- aaCCAacaGCGgUGUGc-GGGGCACGG- -5'
5501 3' -58.9 NC_001798.1 + 89872 0.66 0.804121
Target:  5'- cUGGccgaUGUC-CCACACGCggaacacacCCCG-GCCg -3'
miRNA:   3'- aACCa---ACAGcGGUGUGCG---------GGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 77616 0.66 0.804121
Target:  5'- -aGGUcaucggCGCCACGCGaCgCCGcGCCg -3'
miRNA:   3'- aaCCAaca---GCGGUGUGC-GgGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 124084 0.66 0.804121
Target:  5'- -aGGcgG-CGCC-UGCGCCCCGacgGCCc -3'
miRNA:   3'- aaCCaaCaGCGGuGUGCGGGGCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 51931 0.66 0.804121
Target:  5'- gUGGggGcCGCCGC-CGUgCCGcUGCUc -3'
miRNA:   3'- aACCaaCaGCGGUGuGCGgGGC-ACGG- -5'
5501 3' -58.9 NC_001798.1 + 113476 0.66 0.801488
Target:  5'- uUUGGggGUUgugcgugaucauggGCgGCGCgGCCCUGUGCg -3'
miRNA:   3'- -AACCaaCAG--------------CGgUGUG-CGGGGCACGg -5'
5501 3' -58.9 NC_001798.1 + 33518 0.66 0.795295
Target:  5'- -cGGUUGaaucacaaCGCaUGCACGCCCUcUGCCc -3'
miRNA:   3'- aaCCAACa-------GCG-GUGUGCGGGGcACGG- -5'
5501 3' -58.9 NC_001798.1 + 54289 0.66 0.795295
Target:  5'- cUGGUUcgggGcCGCC-CugGCCCCGgaccUGCUu -3'
miRNA:   3'- aACCAA----CaGCGGuGugCGGGGC----ACGG- -5'
5501 3' -58.9 NC_001798.1 + 76722 0.66 0.795295
Target:  5'- -cGGgaGcgCGCC-CACGCCCUGgagGCg -3'
miRNA:   3'- aaCCaaCa-GCGGuGUGCGGGGCa--CGg -5'
5501 3' -58.9 NC_001798.1 + 134174 0.66 0.795295
Target:  5'- -cGGccgcccgCGCCGCGacgGCCCCG-GCCg -3'
miRNA:   3'- aaCCaaca---GCGGUGUg--CGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 152506 0.66 0.786326
Target:  5'- --------aGCCGCGCGCCCCG-GCg -3'
miRNA:   3'- aaccaacagCGGUGUGCGGGGCaCGg -5'
5501 3' -58.9 NC_001798.1 + 116847 0.66 0.786326
Target:  5'- -cGGgg--CGCUGCACGCCggCGUGCUg -3'
miRNA:   3'- aaCCaacaGCGGUGUGCGGg-GCACGG- -5'
5501 3' -58.9 NC_001798.1 + 104273 0.66 0.786326
Target:  5'- -aGGUuguUGUCGCCGCuuuuuaugGCGCCCgaGU-CCa -3'
miRNA:   3'- aaCCA---ACAGCGGUG--------UGCGGGg-CAcGG- -5'
5501 3' -58.9 NC_001798.1 + 80944 0.66 0.786326
Target:  5'- ------cUCGCCgACGgGCCCCcGUGCCu -3'
miRNA:   3'- aaccaacAGCGG-UGUgCGGGG-CACGG- -5'
5501 3' -58.9 NC_001798.1 + 134417 0.66 0.786326
Target:  5'- -aGGUcgacGUCGacCCGCugGCCCUGU-CCg -3'
miRNA:   3'- aaCCAa---CAGC--GGUGugCGGGGCAcGG- -5'
5501 3' -58.9 NC_001798.1 + 20974 0.66 0.785421
Target:  5'- -gGGaUGUCuGCCAUaguggcaACGCCuuGUcGCCa -3'
miRNA:   3'- aaCCaACAG-CGGUG-------UGCGGggCA-CGG- -5'
5501 3' -58.9 NC_001798.1 + 81799 0.66 0.783608
Target:  5'- -gGGUggcGUcCGCCgGCAcuccccgccccgguCGCCCCGUcGCCg -3'
miRNA:   3'- aaCCAa--CA-GCGG-UGU--------------GCGGGGCA-CGG- -5'
5501 3' -58.9 NC_001798.1 + 112190 0.66 0.777222
Target:  5'- --------gGCCGCACGUCCCGcagGCCg -3'
miRNA:   3'- aaccaacagCGGUGUGCGGGGCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 35397 0.66 0.767992
Target:  5'- gUGGggccgGcCGCCGgAUGCCCgCGgggGCCu -3'
miRNA:   3'- aACCaa---CaGCGGUgUGCGGG-GCa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.