miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 25544 0.66 0.999094
Target:  5'- cGGAGGACG---UGcgCgUGGUGAUCCUc -3'
miRNA:   3'- -CUUCCUGCuuuAUuaG-GCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 27024 0.68 0.995473
Target:  5'- gGgcGGGCGggG--GUCgGGCGGgcggcacgucUCCCg -3'
miRNA:   3'- -CuuCCUGCuuUauUAGgCCGCU----------AGGG- -5'
5501 5' -48.7 NC_001798.1 + 28193 0.66 0.999263
Target:  5'- cGAGGGCGggGggaagGcgCCGGaGGcCCCg -3'
miRNA:   3'- cUUCCUGCuuUa----UuaGGCCgCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 28860 0.71 0.977892
Target:  5'- cGAGGGCGGccucggCCGGCGGagCCCc -3'
miRNA:   3'- cUUCCUGCUuuauuaGGCCGCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 30173 0.66 0.999263
Target:  5'- gGAGGGAcaCGggGgacacggCgCGGgGGUCCCg -3'
miRNA:   3'- -CUUCCU--GCuuUauua---G-GCCgCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 31261 0.7 0.986163
Target:  5'- cGggGGugGGAucugGGUCUGGgGGcggCCCu -3'
miRNA:   3'- -CuuCCugCUUua--UUAGGCCgCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 35389 0.66 0.999094
Target:  5'- gGAAGGGCGug--GggCCGGCcgccgGAUgCCCg -3'
miRNA:   3'- -CUUCCUGCuuuaUuaGGCCG-----CUA-GGG- -5'
5501 5' -48.7 NC_001798.1 + 38303 0.69 0.990622
Target:  5'- gGggGGGCGAcgugGGUGauGUCCGG-GG-CCCg -3'
miRNA:   3'- -CuuCCUGCU----UUAU--UAGGCCgCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 40004 0.66 0.999263
Target:  5'- --cGGAcuCGggGUcGUCgCGGCGG-CCCu -3'
miRNA:   3'- cuuCCU--GCuuUAuUAG-GCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 41468 0.7 0.986163
Target:  5'- gGggGGGCGG------UCGGCGggCCCa -3'
miRNA:   3'- -CuuCCUGCUuuauuaGGCCGCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 44719 0.66 0.999404
Target:  5'- aGGAGGGCGAGcgAGga-GGUGAUaacgcaCCCg -3'
miRNA:   3'- -CUUCCUGCUUuaUUaggCCGCUA------GGG- -5'
5501 5' -48.7 NC_001798.1 + 47075 0.66 0.999263
Target:  5'- -cGGGGCGAcagcg-CCGGUGugguguccGUCCCg -3'
miRNA:   3'- cuUCCUGCUuuauuaGGCCGC--------UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 48779 0.7 0.979553
Target:  5'- cGGGGACGcacggcacccCCGGCGAUUCCc -3'
miRNA:   3'- cUUCCUGCuuuauua---GGCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 52196 0.68 0.995473
Target:  5'- --uGGACGug-----CUGGCGGUCCUg -3'
miRNA:   3'- cuuCCUGCuuuauuaGGCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 55995 0.69 0.989283
Target:  5'- cGGGGGCGAGGgg--CUGGUaggcgGGUCCCg -3'
miRNA:   3'- cUUCCUGCUUUauuaGGCCG-----CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 56214 0.72 0.954261
Target:  5'- cGggGGACGGAAggGGUggaaaagaagacaaCCGGCGGccgggCCCg -3'
miRNA:   3'- -CuuCCUGCUUUa-UUA--------------GGCCGCUa----GGG- -5'
5501 5' -48.7 NC_001798.1 + 56444 0.68 0.995473
Target:  5'- -uAGGAcCGGAAUuccGUCCGG-GuAUCCCg -3'
miRNA:   3'- cuUCCU-GCUUUAu--UAGGCCgC-UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 56513 0.75 0.874285
Target:  5'- cAGGGugGAGcgGAUCgUGGCGGUgCCg -3'
miRNA:   3'- cUUCCugCUUuaUUAG-GCCGCUAgGG- -5'
5501 5' -48.7 NC_001798.1 + 57465 0.67 0.997668
Target:  5'- uGggGGGCGggGccGGUuuGGCGGUggaggCCUu -3'
miRNA:   3'- -CuuCCUGCuuUa-UUAggCCGCUA-----GGG- -5'
5501 5' -48.7 NC_001798.1 + 59003 0.67 0.997033
Target:  5'- gGggGGcGCGGAGgaaccccaggCCGGUGcUCCCg -3'
miRNA:   3'- -CuuCC-UGCUUUauua------GGCCGCuAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.