miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5503 5' -57.3 NC_001798.1 + 76577 0.66 0.854527
Target:  5'- gGCGacCGGCCCCGCgccguacgucgacgGGGGCggGCUGUc- -3'
miRNA:   3'- -UGC--GUCGGGGCGa-------------CCUCGa-UGAUAcu -5'
5503 5' -57.3 NC_001798.1 + 154054 0.66 0.851382
Target:  5'- gGCGCGGCaCgGCUGGAGCgccgggGCg---- -3'
miRNA:   3'- -UGCGUCGgGgCGACCUCGa-----UGauacu -5'
5503 5' -57.3 NC_001798.1 + 26313 0.66 0.851382
Target:  5'- cUGCGGCCCgucuacguggCGCUGGGGCgcgACgccGUGc -3'
miRNA:   3'- uGCGUCGGG----------GCGACCUCGa--UGa--UACu -5'
5503 5' -57.3 NC_001798.1 + 22074 0.66 0.843379
Target:  5'- cUGCGGCCCCGCccccuuUGGGGCg------- -3'
miRNA:   3'- uGCGUCGGGGCG------ACCUCGaugauacu -5'
5503 5' -57.3 NC_001798.1 + 47594 0.66 0.835185
Target:  5'- cGCGCGGgaCCCaCGa-GGAGCUguACUAUGGc -3'
miRNA:   3'- -UGCGUC--GGG-GCgaCCUCGA--UGAUACU- -5'
5503 5' -57.3 NC_001798.1 + 129538 0.66 0.818246
Target:  5'- gGCGCGGCCCUGCUGcuGCcgACa---- -3'
miRNA:   3'- -UGCGUCGGGGCGACcuCGa-UGauacu -5'
5503 5' -57.3 NC_001798.1 + 115652 0.66 0.818246
Target:  5'- cAUGCAGCCCgacaaCGCcaaccuggcucUGGAGCUGCa---- -3'
miRNA:   3'- -UGCGUCGGG-----GCG-----------ACCUCGAUGauacu -5'
5503 5' -57.3 NC_001798.1 + 133204 0.67 0.809517
Target:  5'- aACGCcGCCggagaGCUGGAGCUugUGg-- -3'
miRNA:   3'- -UGCGuCGGgg---CGACCUCGAugAUacu -5'
5503 5' -57.3 NC_001798.1 + 92277 0.67 0.809517
Target:  5'- cGCGCcuGUCCgGCcgaaggccUGGAGCUGCUGUc- -3'
miRNA:   3'- -UGCGu-CGGGgCG--------ACCUCGAUGAUAcu -5'
5503 5' -57.3 NC_001798.1 + 61460 0.67 0.806867
Target:  5'- aGCGCcggggccuccgGGCCCCGgaGG-GCUACUuuacccccaucgccGUGGa -3'
miRNA:   3'- -UGCG-----------UCGGGGCgaCCuCGAUGA--------------UACU- -5'
5503 5' -57.3 NC_001798.1 + 149983 0.67 0.791584
Target:  5'- gGCGCGGCgCCCGCggacgccGGGGCgagcgGCccGUGGc -3'
miRNA:   3'- -UGCGUCG-GGGCGa------CCUCGa----UGa-UACU- -5'
5503 5' -57.3 NC_001798.1 + 97582 0.67 0.791584
Target:  5'- aGCGCGGCCCCGagccaGGGGCgcagggGCcg-GAg -3'
miRNA:   3'- -UGCGUCGGGGCga---CCUCGa-----UGauaCU- -5'
5503 5' -57.3 NC_001798.1 + 114211 0.67 0.773073
Target:  5'- gACGUAgaguuugacGCCCUGCUGGGGUccUACUGc-- -3'
miRNA:   3'- -UGCGU---------CGGGGCGACCUCG--AUGAUacu -5'
5503 5' -57.3 NC_001798.1 + 77484 0.68 0.754055
Target:  5'- cCGCGGCCCgCGCgacGAccGCUGCUcgGGa -3'
miRNA:   3'- uGCGUCGGG-GCGac-CU--CGAUGAuaCU- -5'
5503 5' -57.3 NC_001798.1 + 21937 0.68 0.754055
Target:  5'- cUGCGGCCCCGCccccuuugggcGGAGC-GCgggAUGAc -3'
miRNA:   3'- uGCGUCGGGGCGa----------CCUCGaUGa--UACU- -5'
5503 5' -57.3 NC_001798.1 + 25416 0.68 0.74438
Target:  5'- cGCGCuGGCCUCGCUGGccgcgcGCUGCg---- -3'
miRNA:   3'- -UGCG-UCGGGGCGACCu-----CGAUGauacu -5'
5503 5' -57.3 NC_001798.1 + 77592 0.68 0.74438
Target:  5'- gGCGC-GCCCUGCaGGAGCUGg----- -3'
miRNA:   3'- -UGCGuCGGGGCGaCCUCGAUgauacu -5'
5503 5' -57.3 NC_001798.1 + 96670 0.68 0.720774
Target:  5'- gGCGCcacGGCCgCGCUGGAGCgcguccgggaguUUAUGGu -3'
miRNA:   3'- -UGCG---UCGGgGCGACCUCGau----------GAUACU- -5'
5503 5' -57.3 NC_001798.1 + 46597 0.68 0.714799
Target:  5'- cGCGC-GUCCCGUUcGGGGCUACg---- -3'
miRNA:   3'- -UGCGuCGGGGCGA-CCUCGAUGauacu -5'
5503 5' -57.3 NC_001798.1 + 32577 0.68 0.704784
Target:  5'- cCGCGGcCCCCGCgUGGAGCcGCc---- -3'
miRNA:   3'- uGCGUC-GGGGCG-ACCUCGaUGauacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.