miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 9038 0.7 0.685657
Target:  5'- -cCCCCGc-AGCCAGCGCACgG-CGa -3'
miRNA:   3'- uaGGGGCuuUUGGUCGCGUGgCaGCg -5'
5504 5' -56.2 NC_001798.1 + 124984 0.7 0.695738
Target:  5'- gGUCCCCGAGcAGCaCGGCG-GCCagaaaguagGUCGCg -3'
miRNA:   3'- -UAGGGGCUU-UUG-GUCGCgUGG---------CAGCG- -5'
5504 5' -56.2 NC_001798.1 + 122732 0.7 0.695738
Target:  5'- cUCCUgGAGAACCugauGCGCGCC-UCGa -3'
miRNA:   3'- uAGGGgCUUUUGGu---CGCGUGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 22852 0.7 0.695738
Target:  5'- -aCCCCGAAcccgGACCGuCGCcCCGcCGCg -3'
miRNA:   3'- uaGGGGCUU----UUGGUcGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 135490 0.7 0.705766
Target:  5'- -aCCCCGggGACgCGGa-CGCCG-CGCa -3'
miRNA:   3'- uaGGGGCuuUUG-GUCgcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 86071 0.7 0.714738
Target:  5'- -cCCCCGccgucugggagucGGGGCCccggcuGCGCGCCGcCGCg -3'
miRNA:   3'- uaGGGGC-------------UUUUGGu-----CGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 28985 0.7 0.715732
Target:  5'- -gCCCCaGggGgcggcgccgGCCAaccGCGCGCCGcCGCg -3'
miRNA:   3'- uaGGGG-CuuU---------UGGU---CGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 66856 0.7 0.715732
Target:  5'- gGUUUCCGggGagucGCCGGgGCGCCGggGCu -3'
miRNA:   3'- -UAGGGGCuuU----UGGUCgCGUGGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 86738 0.7 0.715732
Target:  5'- uGUCCgCG-AGGCCGGCGCGCUGcUCa- -3'
miRNA:   3'- -UAGGgGCuUUUGGUCGCGUGGC-AGcg -5'
5504 5' -56.2 NC_001798.1 + 20767 0.7 0.715732
Target:  5'- cUCCCgCGggGAgcgaCGGCGC-CCGcCGCg -3'
miRNA:   3'- uAGGG-GCuuUUg---GUCGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 120345 0.7 0.719698
Target:  5'- -gCCCCGggGugCAGCGCcagcaccugggcgagGCUGU-GCa -3'
miRNA:   3'- uaGGGGCuuUugGUCGCG---------------UGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 22397 0.7 0.725626
Target:  5'- -aCCCCGGcGAGCCGGgGCGCggcggCGUCGa -3'
miRNA:   3'- uaGGGGCU-UUUGGUCgCGUG-----GCAGCg -5'
5504 5' -56.2 NC_001798.1 + 25811 0.7 0.725626
Target:  5'- aGUUCCUGggGcugcugGCCGGCGCcugcgACCGcCGCc -3'
miRNA:   3'- -UAGGGGCuuU------UGGUCGCG-----UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 3663 0.7 0.729562
Target:  5'- cGUCCCCGGGcGCCAcGCGCGgguucuggagccaccCCaUCGCc -3'
miRNA:   3'- -UAGGGGCUUuUGGU-CGCGU---------------GGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 153236 0.69 0.734463
Target:  5'- -gCCCgCGGcggcggaGGACCcGCGCGCCGcCGCc -3'
miRNA:   3'- uaGGG-GCU-------UUUGGuCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 150035 0.69 0.73544
Target:  5'- aGUCCgaguCCGggGcCCGGCGCGgCGcCGCc -3'
miRNA:   3'- -UAGG----GGCuuUuGGUCGCGUgGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 28372 0.69 0.73544
Target:  5'- cGUCCCCGcccg-CGGaCGCGCCG-CGCg -3'
miRNA:   3'- -UAGGGGCuuuugGUC-GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 42682 0.69 0.73544
Target:  5'- cGUCgCCGGGAccACCGGCGuCGgggaaccaguccCCGUCGCc -3'
miRNA:   3'- -UAGgGGCUUU--UGGUCGC-GU------------GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 38722 0.69 0.73544
Target:  5'- -cCCCCGGGAugUaaaAGUGCAUCGucUCGCc -3'
miRNA:   3'- uaGGGGCUUUugG---UCGCGUGGC--AGCG- -5'
5504 5' -56.2 NC_001798.1 + 95023 0.69 0.73544
Target:  5'- --gCCUGGAGGCCGGgGC-CCG-CGCg -3'
miRNA:   3'- uagGGGCUUUUGGUCgCGuGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.