miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5505 5' -56.3 NC_001798.1 + 1737 0.66 0.881055
Target:  5'- -gCGCAGGUCCCgCgCCGccggccAGCgcacGGCGCAc -3'
miRNA:   3'- aaGCGUCUAGGG-G-GGU------UUGa---CCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 23064 0.66 0.866294
Target:  5'- gUUCGCAcGAUcccgucgccCCCCCCGGagcGCgacGGCGCGc -3'
miRNA:   3'- -AAGCGU-CUA---------GGGGGGUU---UGa--CCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 73124 0.66 0.858584
Target:  5'- -cCGUGGAccugUCUCCCCAGggGCUGGC-CGc -3'
miRNA:   3'- aaGCGUCU----AGGGGGGUU--UGACCGuGU- -5'
5505 5' -56.3 NC_001798.1 + 111817 0.66 0.850663
Target:  5'- gUCGCGGG-CgUCCagGGGCUGGCGCGg -3'
miRNA:   3'- aAGCGUCUaGgGGGg-UUUGACCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 20736 0.66 0.844997
Target:  5'- -cCGaCAGAuccaaaaaauaccUCCCCCCGAGCUcccgcggggagcgacGGCGCc -3'
miRNA:   3'- aaGC-GUCU-------------AGGGGGGUUUGA---------------CCGUGu -5'
5505 5' -56.3 NC_001798.1 + 81738 0.66 0.839233
Target:  5'- -gCGCAGGUCCCgCCGGACgcgugccaaaucGCGCGc -3'
miRNA:   3'- aaGCGUCUAGGGgGGUUUGac----------CGUGU- -5'
5505 5' -56.3 NC_001798.1 + 108053 0.67 0.834216
Target:  5'- -cCGUGGGUacggacacccCCCCCCAucugcgGACUGGCAg- -3'
miRNA:   3'- aaGCGUCUA----------GGGGGGU------UUGACCGUgu -5'
5505 5' -56.3 NC_001798.1 + 70947 0.67 0.834216
Target:  5'- -gCGguGGUCCCgCCGccgcuGCUGGCcCAg -3'
miRNA:   3'- aaGCguCUAGGGgGGUu----UGACCGuGU- -5'
5505 5' -56.3 NC_001798.1 + 36129 0.67 0.834216
Target:  5'- cUCGCcgcGAUCCCgCCGGuggGGCGCGg -3'
miRNA:   3'- aAGCGu--CUAGGGgGGUUugaCCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 133585 0.67 0.834216
Target:  5'- -aCGCAGAcgUUUCCCgGGGCggGGCGCGu -3'
miRNA:   3'- aaGCGUCU--AGGGGGgUUUGa-CCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 76427 0.67 0.825704
Target:  5'- -aCGCAag-CCCCUggaaGAGCUGGCGCGc -3'
miRNA:   3'- aaGCGUcuaGGGGGg---UUUGACCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 75201 0.67 0.825704
Target:  5'- -cCGCcccccGGAgCCCCCCGGcgccgacCUGGCGCAg -3'
miRNA:   3'- aaGCG-----UCUaGGGGGGUUu------GACCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 151192 0.67 0.824843
Target:  5'- -gCGCGGAccgugugUCCCCCCAgcGACaggGaGCGCGg -3'
miRNA:   3'- aaGCGUCU-------AGGGGGGU--UUGa--C-CGUGU- -5'
5505 5' -56.3 NC_001798.1 + 136629 0.67 0.817011
Target:  5'- -aCGCAGAgCUCUgCGGGgUGGCGCAa -3'
miRNA:   3'- aaGCGUCUaGGGGgGUUUgACCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 52621 0.67 0.808144
Target:  5'- --gGCGGGUCgacggCCCCCGAGgUgGGCACGu -3'
miRNA:   3'- aagCGUCUAG-----GGGGGUUUgA-CCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 129344 0.67 0.799113
Target:  5'- -cCGCGGAgcgCCCgCCGGGcCUGGCGgGg -3'
miRNA:   3'- aaGCGUCUa--GGGgGGUUU-GACCGUgU- -5'
5505 5' -56.3 NC_001798.1 + 27205 0.68 0.771121
Target:  5'- --gGCGGGggaagCCCCCgGGGCggGGCGCGg -3'
miRNA:   3'- aagCGUCUa----GGGGGgUUUGa-CCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 48834 0.68 0.771121
Target:  5'- gUCGCGGGucccggaucccUCCCCCCcucuccgccgccGGGCgcucgGGCACGu -3'
miRNA:   3'- aAGCGUCU-----------AGGGGGG------------UUUGa----CCGUGU- -5'
5505 5' -56.3 NC_001798.1 + 71421 0.68 0.751805
Target:  5'- -gCGCGGAcgCCCCCCGGccACgGGCuCAg -3'
miRNA:   3'- aaGCGUCUa-GGGGGGUU--UGaCCGuGU- -5'
5505 5' -56.3 NC_001798.1 + 31867 0.69 0.733051
Target:  5'- -cCGCGGAgggggcggcggcccgCCCCCgGAAgaGGCGCGg -3'
miRNA:   3'- aaGCGUCUa--------------GGGGGgUUUgaCCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.