Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 1737 | 0.66 | 0.881055 |
Target: 5'- -gCGCAGGUCCCgCgCCGccggccAGCgcacGGCGCAc -3' miRNA: 3'- aaGCGUCUAGGG-G-GGU------UUGa---CCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 23064 | 0.66 | 0.866294 |
Target: 5'- gUUCGCAcGAUcccgucgccCCCCCCGGagcGCgacGGCGCGc -3' miRNA: 3'- -AAGCGU-CUA---------GGGGGGUU---UGa--CCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 73124 | 0.66 | 0.858584 |
Target: 5'- -cCGUGGAccugUCUCCCCAGggGCUGGC-CGc -3' miRNA: 3'- aaGCGUCU----AGGGGGGUU--UGACCGuGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 111817 | 0.66 | 0.850663 |
Target: 5'- gUCGCGGG-CgUCCagGGGCUGGCGCGg -3' miRNA: 3'- aAGCGUCUaGgGGGg-UUUGACCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 20736 | 0.66 | 0.844997 |
Target: 5'- -cCGaCAGAuccaaaaaauaccUCCCCCCGAGCUcccgcggggagcgacGGCGCc -3' miRNA: 3'- aaGC-GUCU-------------AGGGGGGUUUGA---------------CCGUGu -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 81738 | 0.66 | 0.839233 |
Target: 5'- -gCGCAGGUCCCgCCGGACgcgugccaaaucGCGCGc -3' miRNA: 3'- aaGCGUCUAGGGgGGUUUGac----------CGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 108053 | 0.67 | 0.834216 |
Target: 5'- -cCGUGGGUacggacacccCCCCCCAucugcgGACUGGCAg- -3' miRNA: 3'- aaGCGUCUA----------GGGGGGU------UUGACCGUgu -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 70947 | 0.67 | 0.834216 |
Target: 5'- -gCGguGGUCCCgCCGccgcuGCUGGCcCAg -3' miRNA: 3'- aaGCguCUAGGGgGGUu----UGACCGuGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 36129 | 0.67 | 0.834216 |
Target: 5'- cUCGCcgcGAUCCCgCCGGuggGGCGCGg -3' miRNA: 3'- aAGCGu--CUAGGGgGGUUugaCCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 133585 | 0.67 | 0.834216 |
Target: 5'- -aCGCAGAcgUUUCCCgGGGCggGGCGCGu -3' miRNA: 3'- aaGCGUCU--AGGGGGgUUUGa-CCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 75201 | 0.67 | 0.825704 |
Target: 5'- -cCGCcccccGGAgCCCCCCGGcgccgacCUGGCGCAg -3' miRNA: 3'- aaGCG-----UCUaGGGGGGUUu------GACCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 76427 | 0.67 | 0.825704 |
Target: 5'- -aCGCAag-CCCCUggaaGAGCUGGCGCGc -3' miRNA: 3'- aaGCGUcuaGGGGGg---UUUGACCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 151192 | 0.67 | 0.824843 |
Target: 5'- -gCGCGGAccgugugUCCCCCCAgcGACaggGaGCGCGg -3' miRNA: 3'- aaGCGUCU-------AGGGGGGU--UUGa--C-CGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 136629 | 0.67 | 0.817011 |
Target: 5'- -aCGCAGAgCUCUgCGGGgUGGCGCAa -3' miRNA: 3'- aaGCGUCUaGGGGgGUUUgACCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 52621 | 0.67 | 0.808144 |
Target: 5'- --gGCGGGUCgacggCCCCCGAGgUgGGCACGu -3' miRNA: 3'- aagCGUCUAG-----GGGGGUUUgA-CCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 129344 | 0.67 | 0.799113 |
Target: 5'- -cCGCGGAgcgCCCgCCGGGcCUGGCGgGg -3' miRNA: 3'- aaGCGUCUa--GGGgGGUUU-GACCGUgU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 48834 | 0.68 | 0.771121 |
Target: 5'- gUCGCGGGucccggaucccUCCCCCCcucuccgccgccGGGCgcucgGGCACGu -3' miRNA: 3'- aAGCGUCU-----------AGGGGGG------------UUUGa----CCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 27205 | 0.68 | 0.771121 |
Target: 5'- --gGCGGGggaagCCCCCgGGGCggGGCGCGg -3' miRNA: 3'- aagCGUCUa----GGGGGgUUUGa-CCGUGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 71421 | 0.68 | 0.751805 |
Target: 5'- -gCGCGGAcgCCCCCCGGccACgGGCuCAg -3' miRNA: 3'- aaGCGUCUa-GGGGGGUU--UGaCCGuGU- -5' |
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5505 | 5' | -56.3 | NC_001798.1 | + | 31867 | 0.69 | 0.733051 |
Target: 5'- -cCGCGGAgggggcggcggcccgCCCCCgGAAgaGGCGCGg -3' miRNA: 3'- aaGCGUCUa--------------GGGGGgUUUgaCCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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