Results 41 - 60 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5506 | 3' | -55 | NC_001798.1 | + | 26844 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 26874 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 26904 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 26948 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 26978 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 27016 | 0.69 | 0.849148 |
Target: 5'- cGGggGuCGGGcgGGCgggggUCGGGCGGGcGGCa -3' miRNA: 3'- -CCuuU-GCCCa-UUGg----AGCCCGCUC-CUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 27202 | 0.7 | 0.798478 |
Target: 5'- aGggGCGGGggaAGCCcccgGGGCGGGGcGCg -3' miRNA: 3'- cCuuUGCCCa--UUGGag--CCCGCUCC-UG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 27333 | 0.7 | 0.771023 |
Target: 5'- gGGugGCGGGgAACCgugugCGGGCGGGcGGg -3' miRNA: 3'- -CCuuUGCCCaUUGGa----GCCCGCUC-CUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 27575 | 0.7 | 0.798478 |
Target: 5'- gGGGAGCGGccGGCUcCGGGgGAGgGACg -3' miRNA: 3'- -CCUUUGCCcaUUGGaGCCCgCUC-CUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 29380 | 0.66 | 0.943056 |
Target: 5'- cGGggGCGGGcaccacucagGGCCgcgCcGGCG-GGGCg -3' miRNA: 3'- -CCuuUGCCCa---------UUGGa--GcCCGCuCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 29494 | 0.67 | 0.911692 |
Target: 5'- cGGGGACGGGgccGCCcCGagaGGgGGGGAUu -3' miRNA: 3'- -CCUUUGCCCau-UGGaGC---CCgCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 29903 | 0.7 | 0.780309 |
Target: 5'- gGGuuGgGGGUggUCgCGGGCGGuGGGCu -3' miRNA: 3'- -CCuuUgCCCAuuGGaGCCCGCU-CCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 30152 | 0.7 | 0.789464 |
Target: 5'- -cGGGCGGGggGCCg-GGGUGAGGGa -3' miRNA: 3'- ccUUUGCCCauUGGagCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 30176 | 0.66 | 0.933547 |
Target: 5'- gGGAcACGGGgGACa-CGGcGCGGGGGu -3' miRNA: 3'- -CCUuUGCCCaUUGgaGCC-CGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 30488 | 0.71 | 0.732741 |
Target: 5'- gGGAuccuGugGGGgugGGCCcgUGGGUGAGGAg -3' miRNA: 3'- -CCU----UugCCCa--UUGGa-GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 30953 | 0.76 | 0.473868 |
Target: 5'- gGGggGCGGGcgGGggUCGGGCGGGGGu -3' miRNA: 3'- -CCuuUGCCCa-UUggAGCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 30985 | 0.7 | 0.81605 |
Target: 5'- cGGggGuCGGGcgGGggUCGGGCGGGGGu -3' miRNA: 3'- -CCuuU-GCCCa-UUggAGCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 31018 | 0.7 | 0.81605 |
Target: 5'- cGGggGuCGGGcgGGggUCGGGCGGGGGu -3' miRNA: 3'- -CCuuU-GCCCa-UUggAGCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 31047 | 0.66 | 0.943056 |
Target: 5'- -cGGGCGGGgg---UCGGGCGGGGGu -3' miRNA: 3'- ccUUUGCCCauuggAGCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 31146 | 0.66 | 0.933547 |
Target: 5'- cGgcGCGGG-GGCggCGGuGCGGGGGCg -3' miRNA: 3'- cCuuUGCCCaUUGgaGCC-CGCUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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