miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 26844 0.69 0.856952
Target:  5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3'
miRNA:   3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 26874 0.69 0.856952
Target:  5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3'
miRNA:   3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 26904 0.69 0.856952
Target:  5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3'
miRNA:   3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 26948 0.69 0.856952
Target:  5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3'
miRNA:   3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 26978 0.69 0.856952
Target:  5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3'
miRNA:   3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 27016 0.69 0.849148
Target:  5'- cGGggGuCGGGcgGGCgggggUCGGGCGGGcGGCa -3'
miRNA:   3'- -CCuuU-GCCCa-UUGg----AGCCCGCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 27202 0.7 0.798478
Target:  5'- aGggGCGGGggaAGCCcccgGGGCGGGGcGCg -3'
miRNA:   3'- cCuuUGCCCa--UUGGag--CCCGCUCC-UG- -5'
5506 3' -55 NC_001798.1 + 27333 0.7 0.771023
Target:  5'- gGGugGCGGGgAACCgugugCGGGCGGGcGGg -3'
miRNA:   3'- -CCuuUGCCCaUUGGa----GCCCGCUC-CUg -5'
5506 3' -55 NC_001798.1 + 27575 0.7 0.798478
Target:  5'- gGGGAGCGGccGGCUcCGGGgGAGgGACg -3'
miRNA:   3'- -CCUUUGCCcaUUGGaGCCCgCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 29380 0.66 0.943056
Target:  5'- cGGggGCGGGcaccacucagGGCCgcgCcGGCG-GGGCg -3'
miRNA:   3'- -CCuuUGCCCa---------UUGGa--GcCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 29494 0.67 0.911692
Target:  5'- cGGGGACGGGgccGCCcCGagaGGgGGGGAUu -3'
miRNA:   3'- -CCUUUGCCCau-UGGaGC---CCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 29903 0.7 0.780309
Target:  5'- gGGuuGgGGGUggUCgCGGGCGGuGGGCu -3'
miRNA:   3'- -CCuuUgCCCAuuGGaGCCCGCU-CCUG- -5'
5506 3' -55 NC_001798.1 + 30152 0.7 0.789464
Target:  5'- -cGGGCGGGggGCCg-GGGUGAGGGa -3'
miRNA:   3'- ccUUUGCCCauUGGagCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 30176 0.66 0.933547
Target:  5'- gGGAcACGGGgGACa-CGGcGCGGGGGu -3'
miRNA:   3'- -CCUuUGCCCaUUGgaGCC-CGCUCCUg -5'
5506 3' -55 NC_001798.1 + 30488 0.71 0.732741
Target:  5'- gGGAuccuGugGGGgugGGCCcgUGGGUGAGGAg -3'
miRNA:   3'- -CCU----UugCCCa--UUGGa-GCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 30953 0.76 0.473868
Target:  5'- gGGggGCGGGcgGGggUCGGGCGGGGGu -3'
miRNA:   3'- -CCuuUGCCCa-UUggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 30985 0.7 0.81605
Target:  5'- cGGggGuCGGGcgGGggUCGGGCGGGGGu -3'
miRNA:   3'- -CCuuU-GCCCa-UUggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 31018 0.7 0.81605
Target:  5'- cGGggGuCGGGcgGGggUCGGGCGGGGGu -3'
miRNA:   3'- -CCuuU-GCCCa-UUggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 31047 0.66 0.943056
Target:  5'- -cGGGCGGGgg---UCGGGCGGGGGu -3'
miRNA:   3'- ccUUUGCCCauuggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 31146 0.66 0.933547
Target:  5'- cGgcGCGGG-GGCggCGGuGCGGGGGCg -3'
miRNA:   3'- cCuuUGCCCaUUGgaGCC-CGCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.