miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 153649 0.7 0.815187
Target:  5'- gGGAGGCGuaccuucccgcgcGGcgcguCCgCGGGCGGGGACg -3'
miRNA:   3'- -CCUUUGC-------------CCauu--GGaGCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 30985 0.7 0.81605
Target:  5'- cGGggGuCGGGcgGGggUCGGGCGGGGGu -3'
miRNA:   3'- -CCuuU-GCCCa-UUggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 21820 0.7 0.81605
Target:  5'- cGGAGcccGCGGGaugacgcgGGCCcCGGGC-AGGGCg -3'
miRNA:   3'- -CCUU---UGCCCa-------UUGGaGCCCGcUCCUG- -5'
5506 3' -55 NC_001798.1 + 31018 0.7 0.81605
Target:  5'- cGGggGuCGGGcgGGggUCGGGCGGGGGu -3'
miRNA:   3'- -CCuuU-GCCCa-UUggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 34747 0.7 0.81605
Target:  5'- cGGGAGCGGGgcgGCC-CGGGa-GGGAg -3'
miRNA:   3'- -CCUUUGCCCau-UGGaGCCCgcUCCUg -5'
5506 3' -55 NC_001798.1 + 97578 0.7 0.81605
Target:  5'- gGGGAGCGcGGccccgAGCCagGGGCGcaGGGGCc -3'
miRNA:   3'- -CCUUUGC-CCa----UUGGagCCCGC--UCCUG- -5'
5506 3' -55 NC_001798.1 + 149395 0.7 0.81605
Target:  5'- cGAcGCGGGggGCgUCGGGUagucgGGGGGCc -3'
miRNA:   3'- cCUuUGCCCauUGgAGCCCG-----CUCCUG- -5'
5506 3' -55 NC_001798.1 + 21959 0.69 0.824593
Target:  5'- cGGAGcGCGGGaugacgcgGGCCcCGGGC-AGGGCg -3'
miRNA:   3'- -CCUU-UGCCCa-------UUGGaGCCCGcUCCUG- -5'
5506 3' -55 NC_001798.1 + 34299 0.69 0.832961
Target:  5'- aGGAuACGGGuUGGCUcgCGGGCGGuGcGGCu -3'
miRNA:   3'- -CCUuUGCCC-AUUGGa-GCCCGCU-C-CUG- -5'
5506 3' -55 NC_001798.1 + 148078 0.69 0.832961
Target:  5'- aGGAAACGGG---CCggGGGCcGGGGCc -3'
miRNA:   3'- -CCUUUGCCCauuGGagCCCGcUCCUG- -5'
5506 3' -55 NC_001798.1 + 6299 0.69 0.841149
Target:  5'- gGGGGACGGGccggggggacgGGCCggggggaCGGGCcggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa----------UUGGa------GCCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 10294 0.69 0.841149
Target:  5'- gGGcGACGGGggGACgaCGGGgGGGGGg -3'
miRNA:   3'- -CCuUUGCCCa-UUGgaGCCCgCUCCUg -5'
5506 3' -55 NC_001798.1 + 96033 0.69 0.841149
Target:  5'- cGggGCGGGcggg--CGGGCGAcGGGCa -3'
miRNA:   3'- cCuuUGCCCauuggaGCCCGCU-CCUG- -5'
5506 3' -55 NC_001798.1 + 102483 0.69 0.841149
Target:  5'- aGGAGGCGGGUAGug-CGGG-GAcGGGCc -3'
miRNA:   3'- -CCUUUGCCCAUUggaGCCCgCU-CCUG- -5'
5506 3' -55 NC_001798.1 + 27016 0.69 0.849148
Target:  5'- cGGggGuCGGGcgGGCgggggUCGGGCGGGcGGCa -3'
miRNA:   3'- -CCuuU-GCCCa-UUGg----AGCCCGCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 67195 0.69 0.849148
Target:  5'- aGGggGCGGGgggacAGCCUgGGGUccuugggguucGGGGGu -3'
miRNA:   3'- -CCuuUGCCCa----UUGGAgCCCG-----------CUCCUg -5'
5506 3' -55 NC_001798.1 + 4101 0.69 0.856952
Target:  5'- cGggGCGGGcucGGCCcUGGGCGggcucggccGGGGCg -3'
miRNA:   3'- cCuuUGCCCa--UUGGaGCCCGC---------UCCUG- -5'
5506 3' -55 NC_001798.1 + 26948 0.69 0.856952
Target:  5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3'
miRNA:   3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 26874 0.69 0.856952
Target:  5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3'
miRNA:   3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 26904 0.69 0.856952
Target:  5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3'
miRNA:   3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.