miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 6529 0.71 0.733718
Target:  5'- gGGGGACGGGgggacgGGCCggggggacggggggaCGGGCcggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-----UUGGa--------------GCCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6592 0.71 0.733718
Target:  5'- gGGGGACGGGgggacgGGCCggggggacggggggaCGGGCcggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-----UUGGa--------------GCCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 36581 0.71 0.742464
Target:  5'- cGGggGCGcGcGgcGgC-CGGGCGGGGGCg -3'
miRNA:   3'- -CCuuUGC-C-CauUgGaGCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 36623 0.71 0.742464
Target:  5'- cGGggGCGcGcGgcGgC-CGGGCGGGGGCg -3'
miRNA:   3'- -CCuuUGC-C-CauUgGaGCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 36539 0.71 0.742464
Target:  5'- cGGggGCGcGcGgcGgC-CGGGCGGGGGCg -3'
miRNA:   3'- -CCuuUGC-C-CauUgGaGCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 88058 0.71 0.761614
Target:  5'- gGGggGCGGGcucguccCCUgGGGCGGcGGCg -3'
miRNA:   3'- -CCuuUGCCCauu----GGAgCCCGCUcCUG- -5'
5506 3' -55 NC_001798.1 + 144546 0.71 0.761614
Target:  5'- gGGAGACccgccgugGGGggGCgUUcgaaaGGGCGAGGACg -3'
miRNA:   3'- -CCUUUG--------CCCauUGgAG-----CCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 27333 0.7 0.771023
Target:  5'- gGGugGCGGGgAACCgugugCGGGCGGGcGGg -3'
miRNA:   3'- -CCuuUGCCCaUUGGa----GCCCGCUC-CUg -5'
5506 3' -55 NC_001798.1 + 6384 0.7 0.771023
Target:  5'- gGGggGcCGGGggGCCgggGGGCcggGGGGACg -3'
miRNA:   3'- -CCuuU-GCCCauUGGag-CCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 97542 0.7 0.779387
Target:  5'- cGGAGgcguggcGCGGGgacGCCcgCGaGCGAGGACg -3'
miRNA:   3'- -CCUU-------UGCCCau-UGGa-GCcCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 51037 0.7 0.780309
Target:  5'- cGGGuuaAugGGGU-ACCUgCGGGCGGuguuuaacguGGACg -3'
miRNA:   3'- -CCU---UugCCCAuUGGA-GCCCGCU----------CCUG- -5'
5506 3' -55 NC_001798.1 + 29903 0.7 0.780309
Target:  5'- gGGuuGgGGGUggUCgCGGGCGGuGGGCu -3'
miRNA:   3'- -CCuuUgCCCAuuGGaGCCCGCU-CCUG- -5'
5506 3' -55 NC_001798.1 + 22887 0.7 0.780309
Target:  5'- cGGGuuCGGGUGGCacggUGGGCcgGAGGAg -3'
miRNA:   3'- -CCUuuGCCCAUUGga--GCCCG--CUCCUg -5'
5506 3' -55 NC_001798.1 + 11605 0.7 0.789464
Target:  5'- uGGAAuuggGCGGGgcuaucucGCCgcucgCGGGCGcGGGCg -3'
miRNA:   3'- -CCUU----UGCCCau------UGGa----GCCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 30152 0.7 0.789464
Target:  5'- -cGGGCGGGggGCCg-GGGUGAGGGa -3'
miRNA:   3'- ccUUUGCCCauUGGagCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 27202 0.7 0.798478
Target:  5'- aGggGCGGGggaAGCCcccgGGGCGGGGcGCg -3'
miRNA:   3'- cCuuUGCCCa--UUGGag--CCCGCUCC-UG- -5'
5506 3' -55 NC_001798.1 + 27575 0.7 0.798478
Target:  5'- gGGGAGCGGccGGCUcCGGGgGAGgGACg -3'
miRNA:   3'- -CCUUUGCCcaUUGGaGCCCgCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 23899 0.7 0.799371
Target:  5'- aGGAGGCGcGGgcccgguucgaGGCCUCGGGCGccccggcgcccguguGGGCg -3'
miRNA:   3'- -CCUUUGC-CCa----------UUGGAGCCCGCu--------------CCUG- -5'
5506 3' -55 NC_001798.1 + 102762 0.7 0.807343
Target:  5'- cGgcGCGGG-AACgCUCGcGGCGGGGGa -3'
miRNA:   3'- cCuuUGCCCaUUG-GAGC-CCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 93123 0.7 0.815187
Target:  5'- cGGcGGGCGGGUuugagcagcgccuGGCCUCGgugauGGCGGGcGACg -3'
miRNA:   3'- -CC-UUUGCCCA-------------UUGGAGC-----CCGCUC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.