miRNA display CGI


Results 21 - 40 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 15459 0.66 0.947459
Target:  5'- gGGggGucgcgUGGGUAGacgUGGGCGGGGGg -3'
miRNA:   3'- -CCuuU-----GCCCAUUggaGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 154125 0.66 0.947459
Target:  5'- cGGcgGCGGG-GACCcCGgcGGCG-GGACa -3'
miRNA:   3'- -CCuuUGCCCaUUGGaGC--CCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 3807 0.66 0.943056
Target:  5'- cGAAcCGGGcccgcgccuccuccGCCUCGGGCGccccccagaggccGGGGCg -3'
miRNA:   3'- cCUUuGCCCau------------UGGAGCCCGC-------------UCCUG- -5'
5506 3' -55 NC_001798.1 + 101909 0.66 0.943056
Target:  5'- gGGGAGCGGG--ACCggGGGUaaccgcaacugGGGGAUa -3'
miRNA:   3'- -CCUUUGCCCauUGGagCCCG-----------CUCCUG- -5'
5506 3' -55 NC_001798.1 + 61457 0.66 0.943056
Target:  5'- uGAAGCGccGG-GGCCUcCGGGCcccgGAGGGCu -3'
miRNA:   3'- cCUUUGC--CCaUUGGA-GCCCG----CUCCUG- -5'
5506 3' -55 NC_001798.1 + 29380 0.66 0.943056
Target:  5'- cGGggGCGGGcaccacucagGGCCgcgCcGGCG-GGGCg -3'
miRNA:   3'- -CCuuUGCCCa---------UUGGa--GcCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 67713 0.66 0.943056
Target:  5'- gGGAGGCGGGg-----UGGGCGguacgaccgaaAGGACg -3'
miRNA:   3'- -CCUUUGCCCauuggaGCCCGC-----------UCCUG- -5'
5506 3' -55 NC_001798.1 + 36795 0.66 0.943056
Target:  5'- ---cACGGG-GACCUCGGuuGGGcGACg -3'
miRNA:   3'- ccuuUGCCCaUUGGAGCCcgCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 31047 0.66 0.943056
Target:  5'- -cGGGCGGGgg---UCGGGCGGGGGu -3'
miRNA:   3'- ccUUUGCCCauuggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 10589 0.66 0.943056
Target:  5'- gGGGAACGGGggacugUAugCUauGGCGAgcgguuccgGGGCg -3'
miRNA:   3'- -CCUUUGCCC------AUugGAgcCCGCU---------CCUG- -5'
5506 3' -55 NC_001798.1 + 104819 0.66 0.938419
Target:  5'- cGGGAGCGcGaucGCgaUCGGGgGAGGACu -3'
miRNA:   3'- -CCUUUGCcCau-UGg-AGCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 43703 0.66 0.938419
Target:  5'- cGGAGAUGcGUGGCCa-GGcGCGGGGGg -3'
miRNA:   3'- -CCUUUGCcCAUUGGagCC-CGCUCCUg -5'
5506 3' -55 NC_001798.1 + 52217 0.66 0.933547
Target:  5'- cGGAgcaGACGGuccaGUGGCuCUCGGuggucGUGGGGGCg -3'
miRNA:   3'- -CCU---UUGCC----CAUUG-GAGCC-----CGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 31146 0.66 0.933547
Target:  5'- cGgcGCGGG-GGCggCGGuGCGGGGGCg -3'
miRNA:   3'- cCuuUGCCCaUUGgaGCC-CGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 146414 0.66 0.933547
Target:  5'- gGGGGACGGGgcgAGCC--GGGCaGAGuGCg -3'
miRNA:   3'- -CCUUUGCCCa--UUGGagCCCG-CUCcUG- -5'
5506 3' -55 NC_001798.1 + 132148 0.66 0.933547
Target:  5'- ----cCGGG-GGCCggCGGGCG-GGGCg -3'
miRNA:   3'- ccuuuGCCCaUUGGa-GCCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 30176 0.66 0.933547
Target:  5'- gGGAcACGGGgGACa-CGGcGCGGGGGu -3'
miRNA:   3'- -CCUuUGCCCaUUGgaGCC-CGCUCCUg -5'
5506 3' -55 NC_001798.1 + 9912 0.66 0.933547
Target:  5'- cGGGACcGGUuccaugcgAGCCUCGgcaaaacaucgcGGCGGGGGCg -3'
miRNA:   3'- cCUUUGcCCA--------UUGGAGC------------CCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 130529 0.67 0.928438
Target:  5'- cGGugGCGGcGaUGGCCcCGaGGUGGGGGCc -3'
miRNA:   3'- -CCuuUGCC-C-AUUGGaGC-CCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 19995 0.67 0.928438
Target:  5'- cGGAuucCGGGUucucccGGCCggcCGGG-GAGGGCc -3'
miRNA:   3'- -CCUuu-GCCCA------UUGGa--GCCCgCUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.