Results 41 - 60 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5506 | 3' | -55 | NC_001798.1 | + | 91090 | 0.67 | 0.928438 |
Target: 5'- cGGAGGCGGccgucgugGACCcCGGugcgcugcuccGCGGGGGCg -3' miRNA: 3'- -CCUUUGCCca------UUGGaGCC-----------CGCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 2981 | 0.67 | 0.925259 |
Target: 5'- --cGGCGGGgcggccggcccgcgGGCCcCGGGCGcgGGGGCg -3' miRNA: 3'- ccuUUGCCCa-------------UUGGaGCCCGC--UCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 111892 | 0.67 | 0.923093 |
Target: 5'- cGGGAGcCGGGggaggugcGCCU-GGGCcAGGGCg -3' miRNA: 3'- -CCUUU-GCCCau------UGGAgCCCGcUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 56193 | 0.67 | 0.923093 |
Target: 5'- uGGGGugGGGUGugg-UGGGUacgGGGGACg -3' miRNA: 3'- -CCUUugCCCAUuggaGCCCG---CUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 34969 | 0.67 | 0.923093 |
Target: 5'- aGGggGCGGcc-GCCgaGGuGCGGGGGCc -3' miRNA: 3'- -CCuuUGCCcauUGGagCC-CGCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 87154 | 0.67 | 0.918079 |
Target: 5'- uGGGGAuCGGGggcuGCUgccccgcgugcagcgCGGGCGAcGGGCg -3' miRNA: 3'- -CCUUU-GCCCau--UGGa--------------GCCCGCU-CCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 74848 | 0.67 | 0.91751 |
Target: 5'- cGAGaccuGCGGGU--CCUgGaGGUGGGGGCa -3' miRNA: 3'- cCUU----UGCCCAuuGGAgC-CCGCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 114991 | 0.67 | 0.91751 |
Target: 5'- -uGAACGGGgccAACCUCGucacggcgcuGGUGAuGGGCa -3' miRNA: 3'- ccUUUGCCCa--UUGGAGC----------CCGCU-CCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 22109 | 0.67 | 0.916939 |
Target: 5'- cGGAccAACGGGgcGACCUCgccggccccuuugGGGCcggcGGGGGCc -3' miRNA: 3'- -CCU--UUGCCCa-UUGGAG-------------CCCG----CUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 125683 | 0.67 | 0.916366 |
Target: 5'- gGGggGuCGGGgcgaaggaguccGACgUCGGGCGcgcgcgGGGGCg -3' miRNA: 3'- -CCuuU-GCCCa-----------UUGgAGCCCGC------UCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 29494 | 0.67 | 0.911692 |
Target: 5'- cGGGGACGGGgccGCCcCGagaGGgGGGGAUu -3' miRNA: 3'- -CCUUUGCCCau-UGGaGC---CCgCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 9680 | 0.67 | 0.911692 |
Target: 5'- cGGGAugGGG-GGCUcucacgugCGGGCGGguGGGCu -3' miRNA: 3'- -CCUUugCCCaUUGGa-------GCCCGCU--CCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 14979 | 0.67 | 0.911692 |
Target: 5'- --uAGCGGG--AgCUUGGGCGGGGGg -3' miRNA: 3'- ccuUUGCCCauUgGAGCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 151175 | 0.67 | 0.905639 |
Target: 5'- gGGGggUGGGcGACa--GGGCGcGGACc -3' miRNA: 3'- -CCUuuGCCCaUUGgagCCCGCuCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 122050 | 0.67 | 0.905639 |
Target: 5'- --cAGCGGGggAGCCcUGGGCGcgucGGACg -3' miRNA: 3'- ccuUUGCCCa-UUGGaGCCCGCu---CCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 33795 | 0.67 | 0.905639 |
Target: 5'- uGGcuGCGGGgaGACUcccaUCgGGGCGAGGGg -3' miRNA: 3'- -CCuuUGCCCa-UUGG----AG-CCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 154375 | 0.68 | 0.899353 |
Target: 5'- cGggGgGGGUGuuUUUUGGGgGGGGGCg -3' miRNA: 3'- cCuuUgCCCAUu-GGAGCCCgCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 16950 | 0.68 | 0.899353 |
Target: 5'- gGGGAGCGGGgucaCUUGGGUGAaauaGcGGCa -3' miRNA: 3'- -CCUUUGCCCauugGAGCCCGCU----C-CUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 37 | 0.68 | 0.899353 |
Target: 5'- cGggGgGGGUGuuUUUUGGGgGGGGGCg -3' miRNA: 3'- cCuuUgCCCAUu-GGAGCCCgCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 113337 | 0.68 | 0.899353 |
Target: 5'- ---uACGGGUgGACCggaCGGGCGGuGGCg -3' miRNA: 3'- ccuuUGCCCA-UUGGa--GCCCGCUcCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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