miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 130529 0.67 0.928438
Target:  5'- cGGugGCGGcGaUGGCCcCGaGGUGGGGGCc -3'
miRNA:   3'- -CCuuUGCC-C-AUUGGaGC-CCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 2981 0.67 0.925259
Target:  5'- --cGGCGGGgcggccggcccgcgGGCCcCGGGCGcgGGGGCg -3'
miRNA:   3'- ccuUUGCCCa-------------UUGGaGCCCGC--UCCUG- -5'
5506 3' -55 NC_001798.1 + 111892 0.67 0.923093
Target:  5'- cGGGAGcCGGGggaggugcGCCU-GGGCcAGGGCg -3'
miRNA:   3'- -CCUUU-GCCCau------UGGAgCCCGcUCCUG- -5'
5506 3' -55 NC_001798.1 + 56193 0.67 0.923093
Target:  5'- uGGGGugGGGUGugg-UGGGUacgGGGGACg -3'
miRNA:   3'- -CCUUugCCCAUuggaGCCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 34969 0.67 0.923093
Target:  5'- aGGggGCGGcc-GCCgaGGuGCGGGGGCc -3'
miRNA:   3'- -CCuuUGCCcauUGGagCC-CGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 87154 0.67 0.918079
Target:  5'- uGGGGAuCGGGggcuGCUgccccgcgugcagcgCGGGCGAcGGGCg -3'
miRNA:   3'- -CCUUU-GCCCau--UGGa--------------GCCCGCU-CCUG- -5'
5506 3' -55 NC_001798.1 + 114991 0.67 0.91751
Target:  5'- -uGAACGGGgccAACCUCGucacggcgcuGGUGAuGGGCa -3'
miRNA:   3'- ccUUUGCCCa--UUGGAGC----------CCGCU-CCUG- -5'
5506 3' -55 NC_001798.1 + 74848 0.67 0.91751
Target:  5'- cGAGaccuGCGGGU--CCUgGaGGUGGGGGCa -3'
miRNA:   3'- cCUU----UGCCCAuuGGAgC-CCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 22109 0.67 0.916939
Target:  5'- cGGAccAACGGGgcGACCUCgccggccccuuugGGGCcggcGGGGGCc -3'
miRNA:   3'- -CCU--UUGCCCa-UUGGAG-------------CCCG----CUCCUG- -5'
5506 3' -55 NC_001798.1 + 125683 0.67 0.916366
Target:  5'- gGGggGuCGGGgcgaaggaguccGACgUCGGGCGcgcgcgGGGGCg -3'
miRNA:   3'- -CCuuU-GCCCa-----------UUGgAGCCCGC------UCCUG- -5'
5506 3' -55 NC_001798.1 + 29494 0.67 0.911692
Target:  5'- cGGGGACGGGgccGCCcCGagaGGgGGGGAUu -3'
miRNA:   3'- -CCUUUGCCCau-UGGaGC---CCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 9680 0.67 0.911692
Target:  5'- cGGGAugGGG-GGCUcucacgugCGGGCGGguGGGCu -3'
miRNA:   3'- -CCUUugCCCaUUGGa-------GCCCGCU--CCUG- -5'
5506 3' -55 NC_001798.1 + 14979 0.67 0.911692
Target:  5'- --uAGCGGG--AgCUUGGGCGGGGGg -3'
miRNA:   3'- ccuUUGCCCauUgGAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 33795 0.67 0.905639
Target:  5'- uGGcuGCGGGgaGACUcccaUCgGGGCGAGGGg -3'
miRNA:   3'- -CCuuUGCCCa-UUGG----AG-CCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 122050 0.67 0.905639
Target:  5'- --cAGCGGGggAGCCcUGGGCGcgucGGACg -3'
miRNA:   3'- ccuUUGCCCa-UUGGaGCCCGCu---CCUG- -5'
5506 3' -55 NC_001798.1 + 151175 0.67 0.905639
Target:  5'- gGGGggUGGGcGACa--GGGCGcGGACc -3'
miRNA:   3'- -CCUuuGCCCaUUGgagCCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 154375 0.68 0.899353
Target:  5'- cGggGgGGGUGuuUUUUGGGgGGGGGCg -3'
miRNA:   3'- cCuuUgCCCAUu-GGAGCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 16950 0.68 0.899353
Target:  5'- gGGGAGCGGGgucaCUUGGGUGAaauaGcGGCa -3'
miRNA:   3'- -CCUUUGCCCauugGAGCCCGCU----C-CUG- -5'
5506 3' -55 NC_001798.1 + 37 0.68 0.899353
Target:  5'- cGggGgGGGUGuuUUUUGGGgGGGGGCg -3'
miRNA:   3'- cCuuUgCCCAUu-GGAGCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 113337 0.68 0.899353
Target:  5'- ---uACGGGUgGACCggaCGGGCGGuGGCg -3'
miRNA:   3'- ccuuUGCCCA-UUGGa--GCCCGCUcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.