miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 83950 0.68 0.898712
Target:  5'- gGGAccgccugGACcGGcGGCgaCGGGCGAGGGCc -3'
miRNA:   3'- -CCU-------UUGcCCaUUGgaGCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 147157 0.68 0.892838
Target:  5'- cGGggGuccCGGGUAGCCgcccggcgcCGGGCGGaaGGCg -3'
miRNA:   3'- -CCuuU---GCCCAUUGGa--------GCCCGCUc-CUG- -5'
5506 3' -55 NC_001798.1 + 65240 0.68 0.892838
Target:  5'- uGGAGGcCGGGUggacGAUCUCGGuGCaGAGGu- -3'
miRNA:   3'- -CCUUU-GCCCA----UUGGAGCC-CG-CUCCug -5'
5506 3' -55 NC_001798.1 + 31227 0.68 0.886097
Target:  5'- cGGAgcagcagcAGCGGcGgcGCCccguugCGGGCGGGGGu -3'
miRNA:   3'- -CCU--------UUGCC-CauUGGa-----GCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 36309 0.68 0.886097
Target:  5'- uGGcgGCGGGgcgcgGGCCg-GGGCcGGGGCu -3'
miRNA:   3'- -CCuuUGCCCa----UUGGagCCCGcUCCUG- -5'
5506 3' -55 NC_001798.1 + 3892 0.68 0.886097
Target:  5'- cGGggGCGGGggGCCggcccCGGGCcacGGCu -3'
miRNA:   3'- -CCuuUGCCCauUGGa----GCCCGcucCUG- -5'
5506 3' -55 NC_001798.1 + 73650 0.68 0.886097
Target:  5'- -uGGGCGGGggGgUUCGGGCGGcGGAa -3'
miRNA:   3'- ccUUUGCCCauUgGAGCCCGCU-CCUg -5'
5506 3' -55 NC_001798.1 + 35805 0.68 0.886097
Target:  5'- gGGcgGCGGGgggggGGCgUCGGGacucgcgGAGGGCc -3'
miRNA:   3'- -CCuuUGCCCa----UUGgAGCCCg------CUCCUG- -5'
5506 3' -55 NC_001798.1 + 146077 0.68 0.886097
Target:  5'- gGGGGAgGGGU--CCg-GGGCGAGG-Cg -3'
miRNA:   3'- -CCUUUgCCCAuuGGagCCCGCUCCuG- -5'
5506 3' -55 NC_001798.1 + 33486 0.68 0.879133
Target:  5'- aGAGAgGGGggAAagUgGGGCGGGGGCg -3'
miRNA:   3'- cCUUUgCCCa-UUggAgCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 100739 0.68 0.879133
Target:  5'- aGGGGAUGGGgGACUUgGGGCGcgcGGuCg -3'
miRNA:   3'- -CCUUUGCCCaUUGGAgCCCGCu--CCuG- -5'
5506 3' -55 NC_001798.1 + 83636 0.68 0.879133
Target:  5'- cGGAGGCGGGagcggaggggaUGugCggcucgCGGGCGucuGGGAUg -3'
miRNA:   3'- -CCUUUGCCC-----------AUugGa-----GCCCGC---UCCUG- -5'
5506 3' -55 NC_001798.1 + 150169 0.68 0.879133
Target:  5'- cGGggGCGGGccGCCgcccccucCGcGGCGuggGGGGCg -3'
miRNA:   3'- -CCuuUGCCCauUGGa-------GC-CCGC---UCCUG- -5'
5506 3' -55 NC_001798.1 + 135249 0.68 0.87195
Target:  5'- cGGggGCGGGcgGGCCUgGaaaGGCu-GGACg -3'
miRNA:   3'- -CCuuUGCCCa-UUGGAgC---CCGcuCCUG- -5'
5506 3' -55 NC_001798.1 + 105588 0.68 0.864555
Target:  5'- aGGGuaguACGGGUccauguucgagGGCggCGGGCGGGcGACg -3'
miRNA:   3'- -CCUu---UGCCCA-----------UUGgaGCCCGCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 112441 0.68 0.864555
Target:  5'- cGAGccACGGGgcgGACUUgGGGgGGGGAa -3'
miRNA:   3'- cCUU--UGCCCa--UUGGAgCCCgCUCCUg -5'
5506 3' -55 NC_001798.1 + 48680 0.68 0.864555
Target:  5'- gGGGGACGGGccGCC-CGGaGCGGuGGGg -3'
miRNA:   3'- -CCUUUGCCCauUGGaGCC-CGCU-CCUg -5'
5506 3' -55 NC_001798.1 + 143657 0.68 0.864555
Target:  5'- cGGGuuuCGaGGUAGCgaUUCGcGGCGAGGAa -3'
miRNA:   3'- -CCUuu-GC-CCAUUG--GAGC-CCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 86450 0.69 0.860018
Target:  5'- cGGGGACGGGgGccgguucgugagccuGCUUCGGGcCGcGGGCc -3'
miRNA:   3'- -CCUUUGCCCaU---------------UGGAGCCC-GCuCCUG- -5'
5506 3' -55 NC_001798.1 + 91807 0.69 0.856952
Target:  5'- cGggGCGuGGgGACCgUGGGCGGGGcCc -3'
miRNA:   3'- cCuuUGC-CCaUUGGaGCCCGCUCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.